View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_high_29 (Length: 312)

Name: NF21660_high_29
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_high_29
NF21660_high_29
[»] chr1 (3 HSPs)
chr1 (146-300)||(15741311-15741465)
chr1 (31-87)||(15741230-15741286)
chr1 (232-282)||(5424668-5424718)
[»] chr3 (4 HSPs)
chr3 (150-300)||(49321880-49322030)
chr3 (229-298)||(15086003-15086072)
chr3 (235-298)||(15267089-15267152)
chr3 (35-117)||(49321766-49321848)
[»] scaffold0758 (1 HSPs)
scaffold0758 (150-281)||(4763-4894)
[»] chr4 (3 HSPs)
chr4 (18-119)||(20133056-20133157)
chr4 (145-219)||(20133189-20133263)
chr4 (219-300)||(20135519-20135599)
[»] chr8 (2 HSPs)
chr8 (18-115)||(45311527-45311624)
chr8 (30-66)||(11623993-11624029)
[»] chr6 (7 HSPs)
chr6 (228-300)||(24207511-24207583)
chr6 (31-119)||(24207345-24207433)
chr6 (233-288)||(26590264-26590319)
chr6 (149-208)||(24207461-24207519)
chr6 (235-274)||(2576178-2576217)
chr6 (236-287)||(26260270-26260320)
chr6 (229-287)||(31140217-31140275)
[»] chr5 (2 HSPs)
chr5 (230-298)||(702900-702968)
chr5 (233-287)||(28096146-28096200)
[»] chr7 (5 HSPs)
chr7 (237-300)||(28592471-28592534)
chr7 (230-276)||(3126833-3126879)
chr7 (29-87)||(13280582-13280640)
chr7 (229-298)||(22851390-22851459)
chr7 (230-287)||(44895234-44895291)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 146 - 300
Target Start/End: Original strand, 15741311 - 15741465
Alignment:
Q  146 agtgttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaatagttatggaagtagaagaagataatct 245  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||| || | |||||||||||||||||||||||    
T  15741311 agtgttagaattaacaaaatcacaaaaggaagaacttaaatttgttagtaaacaaggagaagagacttaaagtaataatggaagtagaagaagataatct 15741410  T
Q  246 tgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgatatt 300  Q
    ||||||||||||| ||||||||||||||||| ||||||| || || |||||||||    
T  15741411 tgaacaatctaatgaaaatttgaatgatgacaatctcattaatgatcatgatatt 15741465  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 15741230 - 15741286
Alignment:
Q  31 gtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatg 87  Q
    |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  15741230 gtggttgttagtgatgaacttatttctttgttgacccagttataatttattgtgatg 15741286  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 5424668 - 5424718
Alignment:
Q  232 gaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctc 282  Q
    ||||||||| ||||||||||||||||| || ||||||||||| || |||||    
T  5424668 gaagaagatgatcttgaacaatctaatgaacatttgaatgattacaatctc 5424718  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 150 - 300
Target Start/End: Original strand, 49321880 - 49322030
Alignment:
Q  150 ttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaatagttatggaagtagaagaagataatcttgaa 249  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||  ||||||| | | ||| |||||||||||||||| ||||||    
T  49321880 ttagaattaacaaaatcacaaaaaggataacttaaatttgttagtaaatgagtagaagagtcttaaaacaatgatgaaagtagaagaagataaccttgaa 49321979  T
Q  250 caatctaataaaaatttgaatgatgaccatctcatcaaagaccatgatatt 300  Q
    || |||||| ||||||||||||||||| |||||||| | ||||||||||||    
T  49321980 cattctaatgaaaatttgaatgatgacaatctcatcgatgaccatgatatt 49322030  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 15086072 - 15086003
Alignment:
Q  229 gtagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgata 298  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||| ||||||    
T  15086072 gtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacaatcccatcaatgacaatgata 15086003  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 15267152 - 15267089
Alignment:
Q  235 gaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgata 298  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||    
T  15267152 gaagacaatcttgaacaatctaatgaaaatttgaatgatgacaatctcatcaatgacaatgata 15267089  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 49321766 - 49321848
Alignment:
Q  35 ttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaagcatgcatctg 117  Q
    |||||| ||||||  | |||| |||||||||||||| | |||||||||| |||||| ||||||||||| ||| ||||||||||    
T  49321766 ttgttaataatgagttcatttttttgttgacccagttataatttattgttatggtataatgttttcgcaaaaacatgcatctg 49321848  T

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Target: scaffold0758 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 4763 - 4894
Alignment:
Q  150 ttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaatagttatggaagtagaagaagataatcttgaa 249  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||  ||||||||| | ||||||||| |||||||||||||||||    
T  4763 ttagaattaacaaaatcacaaaagtgagaacataaatttgttagtaaacgagtagaagagccttaaaataatgatggaagtaaaagaagataatcttgaa 4862  T
Q  250 caatctaataaaaatttgaatgatgaccatct 281  Q
    ||||||||| ||||||| ||||||||| ||||    
T  4863 caatctaatgaaaatttaaatgatgacaatct 4894  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 20133056 - 20133157
Alignment:
Q  18 tctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaagcatgcatctg 117  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  20133056 tctaaaggaatgtgtggtagttagtaatgagcttatttctttgttgaaccagttaaaatatattgtgatggtacaatgtcttcgcgaaagcatgcatctg 20133155  T
Q  118 gt 119  Q
    ||    
T  20133156 gt 20133157  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 20133189 - 20133263
Alignment:
Q  145 cagtgttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagacacttaaaata 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20133189 cagtgttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaagagacttaaaata 20133263  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 20135519 - 20135599
Alignment:
Q  219 agttatggaagtagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgatatt 300  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||| || ||||||||||||    
T  20135519 agttatggaagtaaaagaagataatcttgaagaatctaat-aaaatttgaatgatgacaatttcattaatgaccatgatatt 20135599  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 45311527 - 45311624
Alignment:
Q  18 tctaaacgaatgtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaagcatgcatc 115  Q
    |||||| ||| | |||||||||||||||||| |||||||||||||||||  || | |||||||||||||| || ||| ||||||||||||||||||||    
T  45311527 tctaaaggaaggggtggttgttagtaatgaatttatttctttgttgaccttgttataatttattgtgatgatataatattttcgcgaaagcatgcatc 45311624  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 11624029 - 11623993
Alignment:
Q  30 tgtggttgttagtaatgaacttatttctttgttgacc 66  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  11624029 tgtggttgttagtaatggacttagttctttgttgacc 11623993  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 24207511 - 24207583
Alignment:
Q  228 agtagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgatatt 300  Q
    |||| ||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  24207511 agtaaaagaagaaactcttgaacaatctaataaaaatttgaacgatgacaatctcatcaaagaccatgatatt 24207583  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 24207345 - 24207433
Alignment:
Q  31 gtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatggtacaatgttttcgcgaaagcatgcatctggt 119  Q
    |||||| ||||||||||||||||||||||||||||| ||| | | | || |||||||||| ||| ||| || |||||||||||| ||||    
T  24207345 gtggttattagtaatgaacttatttctttgttgacctagttatattatactgtgatggtataatatttccgtgaaagcatgcatttggt 24207433  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 26590264 - 26590319
Alignment:
Q  233 aagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaa 288  Q
    |||||||||||||||||||||||||| |||||| |||||||||  |||||||||||    
T  26590264 aagaagataatcttgaacaatctaatgaaaattggaatgatgaaaatctcatcaaa 26590319  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 24207461 - 24207519
Alignment:
Q  149 gttagaattaacaaaatcacaaaagggataacttaaatttgttagtaaacaagtagaaga 208  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||| |||| ||||    
T  24207461 gttagaatcaacaaaatcacaaaaggg-gaacttaaatttgttagtaaacgagtaaaaga 24207519  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 2576217 - 2576178
Alignment:
Q  235 gaagataatcttgaacaatctaataaaaatttgaatgatg 274  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  2576217 gaagataatcttgaacaatctaatgaaaattggaatgatg 2576178  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Original strand, 26260270 - 26260320
Alignment:
Q  236 aagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaa 287  Q
    |||||||||| |||||||| ||||||| ||||||||||||| ||||||||||    
T  26260270 aagataatct-gaacaatcgaataaaattttgaatgatgacaatctcatcaa 26260320  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 31140217 - 31140275
Alignment:
Q  229 gtagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaa 287  Q
    |||||||||||| |||| |||||||| ||| |||||| |||||||||| |||| |||||    
T  31140217 gtagaagaagatgatctcgaacaatccaatgaaaattggaatgatgacaatcttatcaa 31140275  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 702900 - 702968
Alignment:
Q  230 tagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgata 298  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||| ||| ||||||    
T  702900 tagaagaaaataatcttgaacaatctaatgaaaattcgaatgatgacaatctcatcaatgacaatgata 702968  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 28096146 - 28096200
Alignment:
Q  233 aagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaa 287  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||    
T  28096146 aagaagataatcttgaacaatctaatgaaaattggaatgatgacaatcccatcaa 28096200  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 28592534 - 28592471
Alignment:
Q  237 agataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgatatt 300  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||  |||||| ||| ||||||||    
T  28592534 agataatcttgaaaaatctaatgaaaatttgaatgatgacaattccatcaatgacaatgatatt 28592471  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 3126833 - 3126879
Alignment:
Q  230 tagaagaagataatcttgaacaatctaataaaaatttgaatgatgac 276  Q
    ||||||||| ||||||| |||||| |||||||||||||| |||||||    
T  3126833 tagaagaagttaatcttaaacaatttaataaaaatttgattgatgac 3126879  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 13280582 - 13280640
Alignment:
Q  29 gtgtggttgttagtaatgaacttatttctttgttgacccagtcaaaatttattgtgatg 87  Q
    |||| ||||||||||||| ||||| ||||||||||||| | | | ||||||||||||||    
T  13280582 gtgtagttgttagtaatggacttagttctttgttgaccaatttataatttattgtgatg 13280640  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 22851459 - 22851390
Alignment:
Q  229 gtagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaaagaccatgata 298  Q
    ||||||||| ||||| | |||||||||||| ||||||| || |||||| ||| |||||| ||| ||||||    
T  22851459 gtagaagaaaataatgtcgaacaatctaatgaaaatttaaaagatgacgatcccatcaatgacaatgata 22851390  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 44895234 - 44895291
Alignment:
Q  230 tagaagaagataatcttgaacaatctaataaaaatttgaatgatgaccatctcatcaa 287  Q
    ||||| |||||| ||||||||||| |||| ||| ||||||||||||  ||||||||||    
T  44895234 tagaaaaagatactcttgaacaatataatgaaattttgaatgatgataatctcatcaa 44895291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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