View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_high_35 (Length: 243)
Name: NF21660_high_35
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 47709682 - 47709463
Alignment:
| Q |
15 |
aaattatgtaaaagttcagatatcttgactaaaattcaggaactcaattacaagttcagatatctgattagaaatagtttagatatggaccgagtaatta |
114 |
Q |
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| T |
47709682 |
aaattatgtaaaagttcagatatcttgactaaaattcaggaactcaattacaagttcagatatctgattagaaatagtttagatatggaccgagtaatta |
47709583 |
T |
|
| Q |
115 |
aaccttacatatagttgcttttacattaaattataaactagttaaagtaaagggtaatttgtaacataccatccactaactcatccacaccaagcttaat |
214 |
Q |
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| T |
47709582 |
aaccttacatatagttgcttttacattaaattataaactagttaaagtaaagggtaatttgtaacataatatccactaactcatccacaccaagcttaat |
47709483 |
T |
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| Q |
215 |
gaactcaacatcagtataat |
234 |
Q |
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| T |
47709482 |
gaactcaacatcagtgtaat |
47709463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 16560851 - 16560964
Alignment:
| Q |
111 |
attaaaccttacatatagttgcttttacattaaattataaactagttaaagtaaagggtaatttgtaacataccatccactaactcatccacaccaagct |
210 |
Q |
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||||||||||||||| ||||||||||||||||||| | ||||||||| |||| |||| |||||||||||||||||| ||| ||||| ||| |||||| |
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| T |
16560851 |
attaaaccttacataaagttgcttttacattaaataacaaactagtt-aagtgaaggataatttgtaacataccat----taattcatcaacatcaagct |
16560945 |
T |
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| Q |
211 |
taatgaactcaacatcagt |
229 |
Q |
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| T |
16560946 |
taatgaactcaacatcagt |
16560964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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