View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_high_4 (Length: 552)
Name: NF21660_high_4
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 26570584 - 26571109
Alignment:
| Q |
18 |
tctacttataagagcagccttgtccattactttcatagcaaaatgagcatcagttcctttaagttcaacaagataaacacttccaatgtctccataaccg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570584 |
tctacttataagagcagccttgtccattactttcatagcaaaatgagcatcagttcctttaagttcaacaagataaacacttccaatgtctccataaccg |
26570683 |
T |
|
| Q |
118 |
atacgcttcagaagcctaaaatgggtaagatttagaggactatttttggaagccatgttaattgcatcccaccttatatcaccaccagtatgtggcctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570684 |
atacgcttcagaagcctaaaatgggtaagatttagaggactatttttggaagccatgttaattgcatcccaccttatatcaccaccagtatgtggcctaa |
26570783 |
T |
|
| Q |
218 |
tgttcgatgaacaacttgtgctctctaaactgtcgcttcgagagctagctccacttccgggcgcaccttgattgttcgtctttgtagtagtagacatacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26570784 |
tgttcgatgaacaacttgtgctctctaaactgtcgcttcgagagctagctccacttcctggcgcaccttgattgttcgtctttgtattagtagacatacc |
26570883 |
T |
|
| Q |
318 |
ctttgaaactcctgatggtaatggagttgcagcatcagaatttgaaggcatcctgctgttccttggactttgtcttaagaaagcatcaggaatgtttttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570884 |
ctttgaaactcctgatggtaatggagttgcagcatcagaatttgaaggcatcctgctgttccttggactttgtcttaagaaagcatcaggaatgtttttg |
26570983 |
T |
|
| Q |
418 |
tttggtggacttagtttctgtggtctagttttatttgcagaatttgaatctgtttttgaaacttggtccatatgtttagtagattcacttgctgaatatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26570984 |
tttggtggacttagtttctgtggtctagttttatttgcagaatttgaatctgtttttgaaacttggtccatatgtttagtagattcacttgctgaatatt |
26571083 |
T |
|
| Q |
518 |
catttttgtatgcttctttttcttct |
543 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26571084 |
catttttgtatgcttctttttcttct |
26571109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 18408094 - 18408161
Alignment:
| Q |
73 |
cctttaagttcaacaagataaacacttccaatgtctccataaccgatacgcttcagaagcctaaaatg |
140 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||| | |||||||| ||||| |||||| |
|
|
| T |
18408094 |
cctttaagttcaacaagatacacacttccaatgtcaccgtaaccaacacgcttcacaagccgaaaatg |
18408161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University