View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_high_7 (Length: 534)

Name: NF21660_high_7
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_high_7
NF21660_high_7
[»] chr4 (15 HSPs)
chr4 (260-522)||(7519114-7519376)
chr4 (26-232)||(7519401-7519609)
chr4 (26-383)||(7493595-7493942)
chr4 (19-226)||(7722865-7723072)
chr4 (26-184)||(7129598-7129756)
chr4 (29-141)||(7527544-7527656)
chr4 (26-93)||(7506183-7506250)
chr4 (26-96)||(7481470-7481540)
chr4 (26-133)||(7714578-7714685)
chr4 (288-331)||(7493287-7493330)
chr4 (438-496)||(7130017-7130075)
chr4 (288-331)||(7129849-7129892)
chr4 (288-326)||(7502269-7502307)
chr4 (433-522)||(7723255-7723345)
chr4 (160-196)||(7502391-7502427)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 260 - 522
Target Start/End: Complemental strand, 7519376 - 7519114
Alignment:
Q  260 aaataataacaataaaacagaatatgcaatagcaataattcaaggagcaataattgatagacaaaagcaacatgctggtagtagcaataattgatagaaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7519376 aaataataacaataaaacagaatatgcaatagcaataattcaaggagcaataattgatagacaaaagcaacatgctggcagtagcaataattgatagaaa 7519277  T
Q  360 ctgtatgtgcgaaatataatatattatttttcaatgagaaccacgagttctataacaagataacatattatgggtcatggggtcacaaatttagaacaat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7519276 ctgtatgtgcgaaatataatatattatttttcaatgagaaccacgagttttataacaagataacatattatgggtcatggggtcacaaatttagaacaat 7519177  T
Q  460 ggtgaactaacataagatgtgagacctatgcaaaaagcatttactattaaatgaatttagaat 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7519176 ggtgaactaacataagatgtgagacctatgcaaaaagcatttactattaaatggatttagaat 7519114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 7519609 - 7519401
Alignment:
Q  26 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccattttt--ctctcaagtggataaggagcaatggcttttgatagattgaa 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  7519609 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttttctctcaagtggataaggagcaatggcttttgatagattgaa 7519510  T
Q  124 ttcacacagtacaatttgtgagggtgtcgttgcaaaagttaaagagatatgatatagtttacaaagtgtctgannnnnnnnaaggaaaagtgatattcaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  7519509 ttcacacagtacaatttgtgagggtgtcgttgcaaaagttaaagagatatgatatagtttacaaagtgtctgatttttttaaaggaaaagtgatattcaa 7519410  T
Q  224 gaacttgtg 232  Q
    |||||||||    
T  7519409 gaacttgtg 7519401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 26 - 383
Target Start/End: Complemental strand, 7493942 - 7493595
Alignment:
Q  26 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7493942 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaatt 7493843  T
Q  126 cacacagtacaatttgtgagggtgtcgttgcaaaagtt-aaagagatatgatatagtttacaaagtgtctgannnnnnnnaaggaaaagtgatattcaag 224  Q
    |||||||   ||| ||  |        | |||| | || ||||||||||||||||||||||||||||||||         |||||||| |||||||||||    
T  7493842 cacacag---aatatgata--------tagcaataattcaaagagatatgatatagtttacaaagtgtctgttttttttaaaggaaaaatgatattcaag 7493754  T
Q  225 aacttgtgnnnnnnnnnnnnnnnnnnnnnnnngataaataataacaataaaacagaatatgcaatagcaataattcaaggagcaataattgatagacaaa 324  Q
    ||||||||                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7493753 aacttgtgtattttttattttattttatttatgataaataataacaataaaacagaatatgcaatagcaataattcaaggagcaataattgatagacaaa 7493654  T
Q  325 agcaacatgctggtagtagcaataattgatagaaactgtatgtgcgaaatataatatat 383  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7493653 agcaacatgctagtagtagcaataattgatagaaactgtatgtgcaaaatataatatat 7493595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 7722865 - 7723072
Alignment:
Q  19 cgtggagcccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgataga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7722865 cgtggagcccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgataga 7722964  T
Q  119 ttgaattcacacagtacaatttgtgagggtgtcgttgcaaaagttaaagagatatgatatagtttacaaagtgtctgannnnnnnnaaggaaaagtgata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||        ||| ||||||||||    
T  7722965 ttgaattcacacagtacaatttgtgagggtgtcgttgcaaaagttaaagagatatgatatagtttacaaagcttctgatttttttgaagcaaaagtgata 7723064  T
Q  219 ttcaagaa 226  Q
    ||||||||    
T  7723065 ttcaagaa 7723072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 7129598 - 7129756
Alignment:
Q  26 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaatt 125  Q
    |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||  ||||||||||||| ||   |||||||| ||||| ||||    
T  7129598 cccagcttcccgatcagcttgtcaatcatgttgaacaaaagaccttcagccatttttctcagaagtggataaggaacacaagcttttgaaagattaaatt 7129697  T
Q  126 cacacagtacaatttgtgagggtgtcgttgcaaaagttaaagagatatgatatagttta 184  Q
    |||||||||||||||||||| ||||||||  || |||||||||||||||||||||||||    
T  7129698 cacacagtacaatttgtgagagtgtcgttataagagttaaagagatatgatatagttta 7129756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 7527656 - 7527544
Alignment:
Q  29 agcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaattcac 128  Q
    ||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||| ||||||||||||||| |  ||||| |||||||||||||||||    
T  7527656 agcttcccgatcagcttctcaatcatgttgaacagaataccttcagccatttttctcacaagtggataaggagtacaggcttatgatagattgaattcac 7527557  T
Q  129 acagtacaatttg 141  Q
    |||||||||||||    
T  7527556 acagtacaatttg 7527544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 7506250 - 7506183
Alignment:
Q  26 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtgg 93  Q
    |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| |||||||    
T  7506250 cccagcttcccgatcagcttttgaatcatgttaaacagaagaccttcagccatttttctcacaagtgg 7506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 7481540 - 7481470
Alignment:
Q  26 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggata 96  Q
    |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| || ||||||||||    
T  7481540 cccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccatttttttcgcaagtggata 7481470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 7714578 - 7714685
Alignment:
Q  26 cccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaatt 125  Q
    |||||| ||||||||||||| ||||||||||| |||| ||| | |||||||||||||||| ||||| |||| || |||   ||| |||| ||||||||||    
T  7714578 cccagcctcccgatcagcttctcaatcatgttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatt 7714677  T
Q  126 cacacagt 133  Q
     |||||||    
T  7714678 tacacagt 7714685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 7493330 - 7493287
Alignment:
Q  288 atagcaataattcaaggagcaataattgatagacaaaagcaaca 331  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  7493330 atagcaataattaaaggagcaataattgatagacaaaagaaaca 7493287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 496
Target Start/End: Original strand, 7130017 - 7130075
Alignment:
Q  438 ggggtcacaaatttagaacaatggtgaactaacataagatgtgagacctatgcaaaaag 496  Q
    ||||||||||||| |  |||| ||||| |||||| ||||||||||||||||||||||||    
T  7130017 ggggtcacaaattcaatacaagggtgagctaacaaaagatgtgagacctatgcaaaaag 7130075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 7129849 - 7129892
Alignment:
Q  288 atagcaataattcaaggagcaataattgatagacaaaagcaaca 331  Q
    |||||||||||| ||| |||||||||||||||||||||| ||||    
T  7129849 atagcaataattaaagtagcaataattgatagacaaaagaaaca 7129892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 7502307 - 7502269
Alignment:
Q  288 atagcaataattcaaggagcaataattgatagacaaaag 326  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  7502307 atagcaataattaaagtagcaataattgatagacaaaag 7502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 522
Target Start/End: Original strand, 7723255 - 7723345
Alignment:
Q  433 gtcatggggtcacaaatttagaacaatggtgaactaacataagatgtgaga-cctatgcaaaaagcatttactattaaatgaatttagaat 522  Q
    |||||| ||||||||||| |  ||||  |||| |||||| ||||||||||| |||||||||||||||| |||| |||| || | |||||||    
T  7723255 gtcatgaggtcacaaattcaatacaaaagtgagctaacaaaagatgtgagaccctatgcaaaaagcatatactgttaattggaattagaat 7723345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 7502427 - 7502391
Alignment:
Q  160 agttaaagagatatgatatagtttacaaagtgtctga 196  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  7502427 agttatagagatatgatatagtttacaaagcgtctga 7502391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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