View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_high_8 (Length: 497)
Name: NF21660_high_8
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 47287780 - 47287295
Alignment:
| Q |
1 |
gtcttacatgtactcttgatgtagcctaactaagttttttaaattaatttcaaattgatatgagtttacgaaaagttgtttggccnnnnnnnttcttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47287780 |
gtcttacatgtactcttgatgtagcctaactaagttttttaaattaatttcaaattgatatgagtttacgaaaagttgtttggccaaaaaaattcttgtc |
47287681 |
T |
|
| Q |
101 |
aaagcttaagttctatgtgagatcaacttatctcttgttggaacatgtgtttattataggctcctttgaattacacacaaaatactgcatgatcaatctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287680 |
aaagcttaagttctatgtgagatcaacttatctcttgttggaacctgtgtttattataggctcctttgaattacacacaaaatactgcatgatcaatctg |
47287581 |
T |
|
| Q |
201 |
aaattaaacttggcataaaagatgccacaaatttaaaaggcaaacgtgtcatactgctaccaaagaactataccatatgatactccaattatagtaatta |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47287580 |
aaattaaacttggcatgaaagatgccacaaatttaaaaggcaaacgtgtcatactgctaccaaagaactatacgatatgatactccaattatagtaatta |
47287481 |
T |
|
| Q |
301 |
gtaactgtatcatgagtccattgctcagtctttcatgaacatatattcaagatttgtcgcatattagtaggaatcatacttcttggccttaaactacatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287480 |
gtaactgtatcatgagtccattgctcagtctttcatgaacatgtattcaagatttgtcgcatattagtaggaatcatacttcttggccttaaactacatt |
47287381 |
T |
|
| Q |
401 |
ccttcaaaatcgcccctttagttgccgaatccatcactcctttcaaagacacttaccaccaattccacatgcatgtatatatatat |
486 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47287380 |
ccttcaaaattgcccctttagttgccgaatccatcactcctttcaaagacacttaccaccaattccacatgcatgtatatatatat |
47287295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University