View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_low_1 (Length: 723)

Name: NF21660_low_1
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_low_1
NF21660_low_1
[»] chr6 (21 HSPs)
chr6 (199-455)||(12778685-12778941)
chr6 (537-704)||(12778987-12779154)
chr6 (199-319)||(22873501-22873621)
chr6 (199-326)||(34374063-34374190)
chr6 (199-329)||(18203116-18203245)
chr6 (199-307)||(22888956-22889064)
chr6 (199-307)||(22910499-22910607)
chr6 (199-318)||(12881715-12881833)
chr6 (1-64)||(13330103-13330166)
chr6 (1-67)||(12188300-12188366)
chr6 (5-67)||(27989658-27989720)
chr6 (1-60)||(33549124-33549183)
chr6 (1-67)||(2616489-2616555)
chr6 (2-67)||(21418483-21418548)
chr6 (4-60)||(10338174-10338230)
chr6 (1-37)||(11306171-11306207)
chr6 (1-37)||(17328261-17328297)
chr6 (1-64)||(1056682-1056745)
chr6 (2-60)||(14557982-14558040)
chr6 (2-59)||(24334023-24334080)
chr6 (3-60)||(30127420-30127477)
[»] chr7 (40 HSPs)
chr7 (199-329)||(11001102-11001232)
chr7 (199-298)||(4303119-4303218)
chr7 (1-67)||(26459407-26459473)
chr7 (1-67)||(39631857-39631923)
chr7 (2-67)||(43590920-43590985)
chr7 (5-64)||(29196921-29196980)
chr7 (199-329)||(8915449-8915578)
chr7 (1-63)||(17041009-17041071)
chr7 (1-67)||(30442501-30442567)
chr7 (1-63)||(33222387-33222449)
chr7 (1-63)||(43215201-43215263)
chr7 (216-328)||(1369495-1369608)
chr7 (1-66)||(11700179-11700244)
chr7 (2-63)||(20335829-20335890)
chr7 (7-67)||(7801193-7801253)
chr7 (2-65)||(7499922-7499985)
chr7 (1-68)||(17113807-17113874)
chr7 (1-63)||(2962476-2962538)
chr7 (1-59)||(5668568-5668626)
chr7 (1-67)||(14058266-14058332)
chr7 (1-67)||(14368294-14368360)
chr7 (1-67)||(18363709-18363775)
chr7 (2-60)||(22760883-22760941)
chr7 (1-67)||(23552131-23552197)
chr7 (1-67)||(33869442-33869508)
chr7 (1-67)||(41519261-41519327)
chr7 (3-60)||(36877213-36877270)
chr7 (2-67)||(42711971-42712036)
chr7 (4-60)||(5075976-5076032)
chr7 (3-67)||(39499718-39499782)
chr7 (204-319)||(11228411-11228525)
chr7 (1-59)||(2446329-2446387)
chr7 (1-67)||(7744109-7744175)
chr7 (1-59)||(29385740-29385798)
chr7 (3-67)||(41487375-41487436)
chr7 (2-67)||(19553467-19553531)
chr7 (2-67)||(21877821-21877886)
chr7 (14-67)||(25021345-25021398)
chr7 (2-67)||(25956291-25956355)
chr7 (3-60)||(29785300-29785357)
[»] chr4 (29 HSPs)
chr4 (206-329)||(22716293-22716416)
chr4 (206-329)||(22988801-22988924)
chr4 (1-67)||(37109348-37109414)
chr4 (205-300)||(7634998-7635093)
chr4 (1-63)||(7292795-7292857)
chr4 (1-67)||(49576891-49576957)
chr4 (3-63)||(31759657-31759717)
chr4 (199-306)||(10494626-10494733)
chr4 (1-67)||(2185029-2185095)
chr4 (1-67)||(7949451-7949517)
chr4 (1-67)||(19680785-19680851)
chr4 (9-62)||(16581711-16581764)
chr4 (2-67)||(19238575-19238640)
chr4 (1-62)||(23377974-23378035)
chr4 (4-65)||(38869783-38869844)
chr4 (4-64)||(8030204-8030264)
chr4 (1-67)||(4249190-4249256)
chr4 (1-67)||(4923563-4923629)
chr4 (1-63)||(13015444-13015506)
chr4 (1-59)||(33632133-33632191)
chr4 (1-62)||(34661683-34661744)
chr4 (2-67)||(55427198-55427263)
chr4 (1-64)||(1730486-1730549)
chr4 (199-294)||(6659657-6659751)
chr4 (1-60)||(24234665-24234724)
chr4 (1-67)||(37274456-37274523)
chr4 (1-63)||(10047997-10048059)
chr4 (2-67)||(19229206-19229270)
chr4 (2-67)||(37720212-37720277)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-67)||(19959-20025)
[»] chr5 (20 HSPs)
chr5 (199-305)||(21845218-21845324)
chr5 (1-67)||(25627070-25627136)
chr5 (1-67)||(26078048-26078114)
chr5 (395-455)||(18840378-18840438)
chr5 (220-329)||(18252099-18252208)
chr5 (1-67)||(14285174-14285240)
chr5 (1-63)||(34984823-34984885)
chr5 (4-63)||(22737099-22737158)
chr5 (1-67)||(7918466-7918532)
chr5 (5-67)||(16436631-16436692)
chr5 (4-67)||(87423-87486)
chr5 (1-56)||(25979194-25979249)
chr5 (2-63)||(30883196-30883257)
chr5 (4-64)||(17028264-17028324)
chr5 (5-67)||(5390853-5390913)
chr5 (1-60)||(16773827-16773886)
chr5 (1-67)||(16114986-16115051)
chr5 (5-67)||(21549138-21549200)
chr5 (1-67)||(43442209-43442275)
chr5 (2-67)||(16457823-16457888)
[»] chr1 (28 HSPs)
chr1 (204-309)||(10926895-10927000)
chr1 (1-67)||(33700770-33700836)
chr1 (1-67)||(36371483-36371549)
chr1 (206-329)||(13441924-13442045)
chr1 (1-67)||(4566561-4566627)
chr1 (4-64)||(6122810-6122870)
chr1 (1-56)||(3265948-3266003)
chr1 (1-67)||(6650608-6650674)
chr1 (1-67)||(8177179-8177245)
chr1 (1-67)||(9165192-9165258)
chr1 (219-329)||(23988904-23989014)
chr1 (2-67)||(52116779-52116844)
chr1 (1-61)||(10526842-10526902)
chr1 (1-60)||(2219992-2220051)
chr1 (16-67)||(31794276-31794327)
chr1 (1-67)||(2799875-2799941)
chr1 (1-63)||(11063573-11063635)
chr1 (1-63)||(15786317-15786379)
chr1 (1-67)||(21547477-21547543)
chr1 (1-63)||(51703796-51703858)
chr1 (274-329)||(8220181-8220236)
chr1 (1-67)||(17745253-17745319)
chr1 (5-67)||(52336775-52336837)
chr1 (2-59)||(4824992-4825049)
chr1 (2-59)||(31605846-31605903)
chr1 (1-67)||(35699965-35700033)
chr1 (3-44)||(38947471-38947512)
chr1 (1-30)||(40810517-40810546)
[»] chr8 (28 HSPs)
chr8 (1-67)||(3624593-3624659)
chr8 (1-67)||(8794342-8794408)
chr8 (1-67)||(12988441-12988507)
chr8 (216-304)||(23573240-23573328)
chr8 (202-329)||(24577809-24577936)
chr8 (1-56)||(33017238-33017293)
chr8 (2-67)||(16852353-16852418)
chr8 (2-67)||(19703485-19703550)
chr8 (4-64)||(11819792-11819852)
chr8 (4-67)||(44780114-44780177)
chr8 (1-67)||(968375-968441)
chr8 (1-67)||(18540311-18540377)
chr8 (1-67)||(35690061-35690127)
chr8 (2-67)||(2203505-2203570)
chr8 (199-330)||(2688851-2688980)
chr8 (4-60)||(27750750-27750806)
chr8 (4-64)||(33727873-33727933)
chr8 (577-637)||(37330945-37331005)
chr8 (1-60)||(3058046-3058105)
chr8 (1-60)||(17103399-17103458)
chr8 (1-62)||(6536538-6536599)
chr8 (4-65)||(11518877-11518938)
chr8 (1-60)||(15948046-15948105)
chr8 (4-67)||(29858049-29858112)
chr8 (13-67)||(5264557-5264611)
chr8 (2-60)||(28783080-28783138)
chr8 (1-67)||(29431024-29431090)
chr8 (199-256)||(26377776-26377833)
[»] chr3 (24 HSPs)
chr3 (1-67)||(27093358-27093424)
chr3 (206-329)||(365886-366008)
chr3 (5-67)||(8170685-8170747)
chr3 (1-67)||(16354889-16354955)
chr3 (1-67)||(14186661-14186726)
chr3 (1-67)||(30311319-30311385)
chr3 (1-67)||(32651435-32651501)
chr3 (1-67)||(37788462-37788528)
chr3 (1-63)||(53412962-53413024)
chr3 (2-67)||(14339623-14339688)
chr3 (4-64)||(8075127-8075187)
chr3 (4-67)||(27923043-27923106)
chr3 (2-67)||(47236969-47237034)
chr3 (1-33)||(28703401-28703433)
chr3 (1-33)||(39253744-39253776)
chr3 (4-67)||(8051227-8051290)
chr3 (1-67)||(10445136-10445203)
chr3 (5-60)||(45308903-45308958)
chr3 (1-67)||(4222154-4222220)
chr3 (1-43)||(8796090-8796132)
chr3 (5-67)||(37504377-37504439)
chr3 (1-67)||(46518641-46518707)
chr3 (2-63)||(47454615-47454676)
chr3 (2-67)||(8368797-8368862)
[»] chr2 (30 HSPs)
chr2 (204-329)||(280295-280419)
chr2 (1-67)||(11251100-11251166)
chr2 (206-304)||(35681910-35682008)
chr2 (1-67)||(40416387-40416453)
chr2 (1-67)||(42327392-42327458)
chr2 (199-332)||(32162243-32162375)
chr2 (4-64)||(21195676-21195736)
chr2 (1-67)||(42922427-42922494)
chr2 (1-67)||(11062373-11062439)
chr2 (2-67)||(23052521-23052586)
chr2 (2-67)||(29503284-29503349)
chr2 (4-67)||(12086129-12086192)
chr2 (199-298)||(31635997-31636096)
chr2 (2-67)||(37480088-37480153)
chr2 (1-56)||(4262299-4262354)
chr2 (1-63)||(19322785-19322847)
chr2 (1-67)||(42602567-42602633)
chr2 (199-267)||(27952653-27952721)
chr2 (1-60)||(7799032-7799091)
chr2 (206-305)||(22011087-22011186)
chr2 (1-67)||(33569855-33569922)
chr2 (1-63)||(1729833-1729895)
chr2 (1-67)||(4060211-4060277)
chr2 (1-67)||(6658395-6658461)
chr2 (5-63)||(13803512-13803570)
chr2 (1-67)||(16918575-16918641)
chr2 (230-304)||(18945657-18945731)
chr2 (270-328)||(36648555-36648613)
chr2 (2-60)||(39715012-39715070)
chr2 (5-62)||(17737625-17737682)
[»] scaffold0054 (1 HSPs)
scaffold0054 (199-307)||(10352-10460)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-67)||(94976-95034)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-67)||(42517-42583)
[»] scaffold0122 (1 HSPs)
scaffold0122 (6-67)||(6921-6982)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-60)||(15320-15379)
[»] scaffold0299 (1 HSPs)
scaffold0299 (1-67)||(11541-11607)
[»] scaffold0126 (1 HSPs)
scaffold0126 (5-63)||(25348-25406)
[»] scaffold0172 (1 HSPs)
scaffold0172 (2-67)||(15775-15840)
[»] scaffold0004 (1 HSPs)
scaffold0004 (2-63)||(81562-81623)
[»] scaffold0240 (1 HSPs)
scaffold0240 (270-330)||(15683-15743)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-60)||(13043-13102)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-67)||(41630-41696)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-58)||(49328-49385)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 5e-95; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 199 - 455
Target Start/End: Original strand, 12778685 - 12778941
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||||||||||| ||| |||||||||| ||||||| ||||||||||||||||| |||||||| |  ||| ||||||||| ||||||||||||||||||||    
T  12778685 cctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgatagagtt--tcctttgcatgttgactcctccaatgaacaagag 12778782  T
Q  299 accaccctcttagatcccattaagtgaaatgagaggacattgttttttgtttccaagctctgtattcaacctcgattagtttgttgaat--tagatagtg 396  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  12778783 acaaccctcttggatcccattaagtgaaatgagaggacattgttttttgtttctaagctctgtattcaacctggattagtttgttgaattatagatagtg 12778882  T
Q  397 ttcaatcaattgtgttttggaactgtctctatatatctgatgaaggcattgaagtgaca 455  Q
    ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  12778883 ttcaatcaattgtgttttggagctgtctctatatatctgatggaagcattgaagtgaca 12778941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 537 - 704
Target Start/End: Original strand, 12778987 - 12779154
Alignment:
Q  537 tagctatgtgaaacttgataccaagactttaaattgtactagtgaaagtattatctgcattgctcactgaagaacttacatatttgcagtatctagttgt 636  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12778987 tagctatgcgaaacttgataccaagactttaaattgtactagtgaaagtattatctgcattgctcactgaagaacttacatatttgcagtatctagttgt 12779086  T
Q  637 gatgcatcatgacnnnnnnnnctttgcatattgcttaactgcatcaagggaagagttgagtttactta 704  Q
    |||||||||||||        ||||||||||||||||||||| |||||||||||||||||||||||||    
T  12779087 gatgcatcatgacttttttttctttgcatattgcttaactgcgtcaagggaagagttgagtttactta 12779154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 319
Target Start/End: Complemental strand, 22873621 - 22873501
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| |||  ||||||||||| ||| |||| ||||| |||||||||||||| ||| |||||| ||||| || ||||||||||||||||||||    
T  22873621 cctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaagag 22873522  T
Q  299 accaccctcttagatcccatt 319  Q
    || |||||| | |||||||||    
T  22873521 acaaccctcctggatcccatt 22873501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 34374063 - 34374190
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||||||||| | ||| |||||| ||| |||||||| ||||| | |||||||| ||||| |||  ||||| |||||||| |||| |||||||||||||||    
T  34374063 cctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttccaatgaacaagag 34374162  T
Q  299 accaccctcttagatcccattaagtgaa 326  Q
    ||||| ||||| ||||||||| ||||||    
T  34374163 accactctcttggatcccattgagtgaa 34374190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 199 - 329
Target Start/End: Complemental strand, 18203245 - 18203116
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| |||||||||| ||||||||||||| |  |||||||| | ||| |||  || || |||||||| ||||||| ||||||||||||    
T  18203245 cctcctacatcagtctcctccacctctgaagaactcgacccgag-ttctcattttaataaagagttttccatgcatgttgactcctcgaatgaacaagag 18203147  T
Q  299 accaccctcttagatcccattaagtgaaatg 329  Q
    ||||||||| ||||||||||| |||||||||    
T  18203146 accaccctcctagatcccattcagtgaaatg 18203116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 22889064 - 22888956
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| |||  ||||||||||| ||| | |||||||| |||||||||||||| ||| |||||| ||||| || ||||||||||||||||||||    
T  22889064 cctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactcctccaatgaacaagag 22888965  T
Q  299 accaccctc 307  Q
    || ||||||    
T  22888964 acaaccctc 22888956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 22910607 - 22910499
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| |||  ||||||||||| ||| | |||||||| |||||||||||||| ||| |||||| || || || ||||||||||||||||||||    
T  22910607 cctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactcctccaatgaacaagag 22910508  T
Q  299 accaccctc 307  Q
    || ||||||    
T  22910507 acaaccctc 22910499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 12881833 - 12881715
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| ||||||||   |||||||||||||| |  |||||||  |||| ||| |||||| |||||||| ||| || |||||||||||||    
T  12881833 cctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgata-agaacttcccatgcatgttgacttcttcaatgaacaagag 12881735  T
Q  299 accaccctcttagatcccat 318  Q
    ||||||||| | ||||||||    
T  12881734 accaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13330166 - 13330103
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||| |||||||||||| ||||||| |||| |||||||| ||| |||||||||||||    
T  13330166 agagaatcgaatctgagaccttgaggaggagcttactcccaagttcaaagtcaataccactagg 13330103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12188300 - 12188366
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||| ||| ||||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  12188300 agagaatcgaacttgaaaccttgaggaggagcacactcccaggtcccaagccaataccactaggcca 12188366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 27989658 - 27989720
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||| ||||| |  ||||||||||| ||||||||||||| |||||||||||||||    
T  27989658 aatcgaacctgaaaccttaagaaggagcatactcccaagttccaagctaataccactaggcca 27989720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33549183 - 33549124
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||| || |||||||| ||| ||| || |||||||||||||||    
T  33549183 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccac 33549124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2616555 - 2616489
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| ||||| |||||||||||||||||||| ||||||| |   ||||| |||||||||||||||    
T  2616555 agagaaacgaacttgagaccttgaagaggagcacacttccatgactcaagctaataccactaggcca 2616489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21418548 - 21418483
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||| |||||| | || |||||||| ||| |||||| ||||||||||||||| ||||||    
T  21418548 gagaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaataccaccaggcca 21418483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 10338174 - 10338230
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||| |||||||| ||| | | || |||||||||||||||    
T  10338174 gaatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 10338230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11306171 - 11306207
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatact 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11306171 agagaatcgaacctgagaccttgaagatgagcatact 11306207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17328261 - 17328297
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatact 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17328261 agagaatcgaacctgaaaccttgaagaggagcatact 17328297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1056682 - 1056745
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    |||||||||||| | | ||||||| || ||||||||| |||||| ||| |||||||||||||||    
T  1056682 agagaatcgaacttaaaaccttgaggatgagcatactcccaagtcccaggccaataccactagg 1056745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 14558040 - 14557982
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    |||||||||||||||||||  || |||||||| ||||||| || ||||||||| |||||    
T  14558040 gagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccac 14557982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 24334023 - 24334080
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    |||||| |||||||||||||||| |||||||||||| | | || ||||||||| ||||    
T  24334023 gagaattgaacctgagaccttgaggaggagcatactgcaatgtcccaagccaacacca 24334080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 30127477 - 30127420
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||| ||||||||||| ||| |||    |||||||||||||||    
T  30127477 agaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccac 30127420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 11001102 - 11001232
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||||| |||||    
T  11001102 cctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctccaatgaaaaagag 11001201  T
Q  299 accaccctcttagatcccattaagtgaaatg 329  Q
    | || |||| | ||||||||| |||||||||    
T  11001202 atcatcctcctggatcccattgagtgaaatg 11001232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 4303218 - 4303119
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| |||||||||| |||||||||| ||| | |||||||| ||||| ||| |||||| |||||||  ||||||||||||||||||||    
T  4303218 cctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactcctccaatgaacaagag 4303119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26459407 - 26459473
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  26459407 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggcca 26459473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39631923 - 39631857
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| ||||||| |||| ||| || ||||||||||||||||||||||    
T  39631923 agagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaataccactaggcca 39631857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 43590985 - 43590920
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||| |||| |||||||| ||| |||||| ||||||||||||||| ||||||    
T  43590985 gagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggcca 43590920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 29196980 - 29196921
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||| |||||| |||||||    
T  29196980 aatcgaacctgagaccttgaagacgagcacacttccaagtcccaaaccaatatcactagg 29196921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 8915449 - 8915578
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| ||||| |||| ||||||| |||||| |||||||||| | ||| | | || ||| |||||||| |||||||| |||||||||||    
T  8915449 cctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagct-cccatgcatgttgactcctccgatgaacaagag 8915547  T
Q  299 accaccctcttagatcccattaagtgaaatg 329  Q
    |||| |||  ||||| |||||  ||||||||    
T  8915548 accaaccttctagatgccattgggtgaaatg 8915578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17041009 - 17041071
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||||||| |||||||| |||||||  | |||||||||| |||||||    
T  17041009 agagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactag 17041071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30442567 - 30442501
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| ||||||||| |||||||| ||| ||| || |||||||||||||||| |||||    
T  30442567 agagaatcgaacctcagaccttgaggaggagcaaactcccaggtcccaagccaataccactgggcca 30442501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33222449 - 33222387
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||||||| || ||| | ||||||| || ||||||||||||||||||    
T  33222449 agagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccactag 33222387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43215263 - 43215201
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||||||| |||||||| ||| | | || ||||||||||||||||||    
T  43215263 agagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactag 43215201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 1369608 - 1369495
Alignment:
Q  216 ctccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaac-aagagaccaccctcttagatc 314  Q
    |||||||||| |||||||||| ||| | |||| ||| ||||| ||| |||||| || ||||| ||||||||||||||| ||| ||||||||||   ||||    
T  1369608 ctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaaagcgaccaccctccacgatc 1369509  T
Q  315 ccattaagtgaaat 328  Q
    ||||| | ||||||    
T  1369508 ccattgaatgaaat 1369495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11700244 - 11700179
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcc 66  Q
    |||||||||||||||||||||||| |||||||| |||  |||||  ||||||||| ||||||||||    
T  11700244 agagaatcgaacctgagaccttgaggaggagcaaactctcaagtctcaagccaatgccactaggcc 11700179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 20335829 - 20335890
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||| || |||||||| ||| |||||| ||||||||||||| ||||    
T  20335829 gagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctag 20335890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 7801253 - 7801193
Alignment:
Q  7 tcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||| ||||||||| ||||||    
T  7801253 tcgaacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggcca 7801193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 7499922 - 7499985
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggc 65  Q
    |||||||||||||||||||| ||||||||||| |||  || || ||||||||||| ||||||||    
T  7499922 gagaatcgaacctgagacctcgaagaggagcaaactctcaggtcccaagccaatatcactaggc 7499985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17113874 - 17113807
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggccac 68  Q
    |||||||||||| ||||||||||| ||| |||| ||| ||| |||| |||||||||| ||||||||||    
T  17113874 agagaatcgaacttgagaccttgaggagaagcacactcccaggttctaagccaatacaactaggccac 17113807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2962538 - 2962476
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||| ||||| |||||||| |||  || ||||||| |||||||||||||    
T  2962538 agagaatcgaacctgagatcttgaggaggagcacactcacaggttccaaaccaataccactag 2962476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5668568 - 5668626
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    |||||||||| |||||||||| || |||||||| ||||||| || ||||||||||||||    
T  5668568 agagaatcgatcctgagacctcgaggaggagcacacttccatgtcccaagccaatacca 5668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14058332 - 14058266
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| || ||||| |||  || |||||||| ||||||||| ||||||    
T  14058332 agagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggcca 14058266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14368360 - 14368294
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| || ||||| |||  || |||||||| ||||||||| ||||||    
T  14368360 agagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggcca 14368294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18363775 - 18363709
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||||||| |||||||| ||| |||| |  |||||| ||||||||||||||    
T  18363775 agagaatcaaacctgagaccttgaggaggagcacactcccaaatctcaagcctataccactaggcca 18363709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 22760941 - 22760883
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||||| |||||||| ||| ||| || ||||| |||||||||    
T  22760941 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccac 22760883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23552197 - 23552131
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||| ||||||||||| |||||||| ||| ||| || ||||| ||||| ||||||||||    
T  23552197 agagaatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggcca 23552131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33869442 - 33869508
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||| ||||||||||  ||||||| ||||||| ||  ||||||||||| |||||||||    
T  33869442 agagaatcgaaccagagaccttgagaaggagcacacttccaggtctcaagccaatactactaggcca 33869508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41519261 - 41519327
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| ||||||||||||||||| |||||||| ||| | || | ||||| ||||||||||||||||    
T  41519261 agagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggcca 41519327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 36877213 - 36877270
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||| ||| |||||||||||||||||||||  ||||| ||||| |||||||||    
T  36877213 agaatcgaatctgcgaccttgaagaggagcatactctcaagtcccaagtcaataccac 36877270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 42712036 - 42711971
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||| ||||||||||| |||||||| ||| ||| || |||||| |||||||||| ||||    
T  42712036 gagaatcgaacatgagaccttgaggaggagcacactcccatgtaccaagctaataccactaagcca 42711971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 5075976 - 5076032
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||| |||||||||| ||||||||| ||| |||||  |||||||||||||||    
T  5075976 gaatcgaacttgagaccttgcagaggagcacactcccaagaaccaagccaataccac 5076032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 39499718 - 39499782
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||| ||||||||| ||||||| || |||  || || ||||||||||||||||||||||    
T  39499718 agaatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggcca 39499782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 11228525 - 11228411
Alignment:
Q  204 tacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccac 303  Q
    ||||||| ||| |||| ||||| ||||||| | |||| | |||||||| | ||| ||| |||||| |||||| | ||||||  |||||||||||||| ||    
T  11228525 tacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgatgactcctataatgaacaagagactac 11228427  T
Q  304 cctcttagatcccatt 319  Q
    |||||| |||| ||||    
T  11228426 cctcttggatctcatt 11228411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2446387 - 2446329
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    |||||||||||| ||||| || || |||||||| ||| |||||| ||||||||||||||    
T  2446387 agagaatcgaacttgagatctcgaggaggagcacactcccaagtcccaagccaatacca 2446329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7744109 - 7744175
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||||||| |||||||||| | |||  | | ||||| ||||||||||||||    
T  7744109 agagaatcaaacctgagaccttgaggaggagcatagtcccagatcctaagcctataccactaggcca 7744175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29385740 - 29385798
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    |||||||| ||||||||||||||| |||||||| ||| | |||| ||||||||| ||||    
T  29385740 agagaatcaaacctgagaccttgaggaggagcacactccaaagtcccaagccaacacca 29385798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 41487436 - 41487375
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||   |||| | ||| |||||| ||||||||||||||| ||||||    
T  41487436 agaatcgaacctgagaccttga---ggagaacactcccaagtcccaagccaataccaccaggcca 41487375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 19553531 - 19553467
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| |||||| ||||||||| |||||||| ||| ||| || ||||||||||||||| ||||||    
T  19553531 gagaattgaacctaagaccttgaggaggagcacactcccaggt-ccaagccaataccaccaggcca 19553467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21877886 - 21877821
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||| ||||||||| | ||||||||  || ||| || ||||| ||||||||||||||||    
T  21877886 gagaatcgaacgtgagaccttaaggaggagcaccctcccaggtcccaagtcaataccactaggcca 21877821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 25021345 - 25021398
Alignment:
Q  14 tgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| |||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  25021345 tgagactttgaggaggagcacactcccaggtcccaagccaataccactaggcca 25021398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 25956291 - 25956355
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| |||||| ||||||||| |||||||| ||| | | || ||||||||||||||||||||||    
T  25956291 gagaattgaacctaagaccttga-gaggagcacactccaaggtcccaagccaataccactaggcca 25956355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 29785300 - 29785357
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    |||||||||| ||||||||||| |||||||| |||||||  | ||||||| |||||||    
T  29785300 agaatcgaacatgagaccttgaggaggagcacacttccagatcccaagcctataccac 29785357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 22716416 - 22716293
Alignment:
Q  206 catcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccc 305  Q
    ||||| ||| ||||| ||||||||||||||||||| | |||||||| ||||| ||| |||||| | |||||| |||||||||||||||||||||||||||    
T  22716416 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagaccaccc 22716317  T
Q  306 tcttagatcccattaagtgaaatg 329  Q
    || |  ||| |||| |||||||||    
T  22716316 tcctgaatcacattgagtgaaatg 22716293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 22988801 - 22988924
Alignment:
Q  206 catcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccc 305  Q
    ||||| ||| ||||| ||||||||||||||||||| | |||||||| ||||| ||| |||||| | |||||| |||||||||||||||||||||||||||    
T  22988801 catcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgttgactcctccaatgaacaagagaccaccc 22988900  T
Q  306 tcttagatcccattaagtgaaatg 329  Q
    || |  ||| |||| |||||||||    
T  22988901 tcctgaatcacattgagtgaaatg 22988924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37109348 - 37109414
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  37109348 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggcca 37109414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 7635093 - 7634998
Alignment:
Q  205 acatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagac 300  Q
    |||||| ||| ||||| |||| ||||||||||||||||||||||||| | ||| | | || ||| |||||||| |||||||| |||||||||||||    
T  7635093 acatcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagagac 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7292795 - 7292857
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    ||||||||||||||||||| |||| |||||||| ||| ||| |||||||||||||||||||||    
T  7292795 agagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactag 7292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 49576891 - 49576957
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| |||||| | ||||||||||||| ||||||    
T  49576891 agagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaataccaccaggcca 49576957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 31759657 - 31759717
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    ||||||||| |||||||||||| |||||||| ||| |||||| ||||||||||||||||||    
T  31759657 agaatcgaatctgagaccttgaggaggagcacactcccaagtcccaagccaataccactag 31759717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 10494733 - 10494626
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| ||| || ||| |||||||||||| ||| |||| ||  ||||| | | |||||| |||||||  ||||||||||||||||||||    
T  10494733 cctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcgactcctccaatgaacaagag 10494634  T
Q  299 accaccct 306  Q
    ||||||||    
T  10494633 accaccct 10494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2185029 - 2185095
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||| ||||  ||||||| ||| ||| ||||||||||| |||||||||||||    
T  2185029 agagaatcgaacctgagactttgagaaggagcacactcccaggttccaagccattaccactaggcca 2185095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7949451 - 7949517
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| | | || ||||||||||||| ||||||||    
T  7949451 agagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggcca 7949517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19680785 - 19680851
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| ||||||||| || ||||| ||| |||||| |||||| |||||||||||||||    
T  19680785 agagaatcgaacctaagaccttgaggaagagcacactcccaagtcccaagcgaataccactaggcca 19680851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 16581764 - 16581711
Alignment:
Q  9 gaacctgagaccttgaagaggagcatacttccaagttccaagccaataccacta 62  Q
    |||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||    
T  16581764 gaacctgagaccttgaggaggagcagactcccaggttccaagccaataccacta 16581711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 19238575 - 19238640
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||| ||||||| || |||||||| ||| |||||| ||||||||||||||| ||||||    
T  19238575 gagaatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggcca 19238640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23378035 - 23377974
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccacta 62  Q
    |||||||||||||||||||||||| |||||||| ||| ||| || ||||||||||| |||||    
T  23378035 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataacacta 23377974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 38869844 - 38869783
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggc 65  Q
    ||||||||||||||||||||| |||||||| ||| |||  | ||||||||||||||||||||    
T  38869844 gaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaataccactaggc 38869783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 8030204 - 8030264
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||| ||||||||||| |||||||| ||| |||||| ||||||| |||||||||||    
T  8030204 gaatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcctataccactagg 8030264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4249256 - 4249190
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||||||| |||||||| ||| | || | ||||||| ||||||||||||||    
T  4249256 agagaatcaaacctgagaccttgaggaggagcacactccaaaatcccaagcctataccactaggcca 4249190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4923629 - 4923563
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||| ||| |||||||||||| || ||||| |||| |||||||||| |||||| ||||||||||    
T  4923629 agagaattgaatctgagaccttgacgatgagcacactttcaagttccaaaccaataacactaggcca 4923563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13015506 - 13015444
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||| |||||| | || |||||||| ||| |||||| ||||||||||||||||||    
T  13015506 agagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaataccactag 13015444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33632133 - 33632191
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    |||||||||| |||| |||||||| |||||||||||| |||  ||||||||||||||||    
T  33632133 agagaatcgatcctgggaccttgaggaggagcatactcccatattccaagccaatacca 33632191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34661744 - 34661683
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccacta 62  Q
    |||||||||||||| | |||||||||||||||| |||||||||  |||||  ||||||||||    
T  34661744 agagaatcgaacctaaaaccttgaagaggagcacacttccaagacccaagttaataccacta 34661683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 55427198 - 55427263
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||| ||  ||||||| ||| ||| || ||||||||||||||| ||||||    
T  55427198 gagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaataccaccaggcca 55427263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1730486 - 1730549
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||| ||| ||||||| ||||||||||||| |||  || || |||||||||||||||||||    
T  1730486 agagaatagaatctgagactttgaagaggagcacactctcaggtcccaagccaataccactagg 1730549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 294
Target Start/End: Original strand, 6659657 - 6659751
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaaca 294  Q
    |||| ||||||| ||| ||| |||||| |||||||||| |||||||||||||  ||||| ||| |||||| || || || |||||||||| |||||    
T  6659657 cctcctacatcagtctcctctacctctgaagaactcga-cccaaattctcatcttgataaagagcttcccatgaatattgactcctccaaagaaca 6659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24234724 - 24234665
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    |||||||||||| ||||||||| | || ||||| ||| |||||| |||||||||||||||    
T  24234724 agagaatcgaacttgagaccttcaggatgagcacactcccaagtcccaagccaataccac 24234665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37274456 - 37274523
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaa-taccactaggcca 67  Q
    |||||||||||||| ||||||||| |||||||| ||| ||| || ||||||||| ||| |||||||||    
T  37274456 agagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaattacgactaggcca 37274523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10048059 - 10047997
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||| |||  |||||||||||   | || ||||||||||||||||||    
T  10048059 agagaatcgaacctgagaccatgagaaggagcatactcttaggtcccaagccaataccactag 10047997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 19229206 - 19229270
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||| || |||||||| | ||| |||| ||| ||||||||||| ||||||    
T  19229206 gagaatcgaacctgagacctcgaggaggagcaca-ttctaagtcccaggccaataccaccaggcca 19229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 37720212 - 37720277
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| |||||||| |||| ||| ||| ||| || ||||||||||| ||| ||||||    
T  37720212 gagaatcgaacctgggaccttgaggaggggcacactcccaggtcccaagccaataacaccaggcca 37720277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19959 - 20025
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  19959 agagaatcgaacctgagaccttgaggaggagcatactcccaggttccaagccaataccactaggcca 20025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 21845218 - 21845324
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||||| ||||| |||  ||||||||| |||||||||||||| | |||||||| ||||| ||| |||||| |||||||| |||||||||||||||||||     
T  21845218 cctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgttgactcctccaatgaacaagaa 21845317  T
Q  299 accaccc 305  Q
    |||||||    
T  21845318 accaccc 21845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25627136 - 25627070
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  25627136 agagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggcca 25627070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26078048 - 26078114
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||    
T  26078048 agagaatcgaacctgagaccttgaagagaagcatactcccaagtcccaaaccaataccactaggcca 26078114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 455
Target Start/End: Complemental strand, 18840438 - 18840378
Alignment:
Q  395 tgttcaatcaattgtgttttggaactgtctctatatatctgatgaaggcattgaagtgaca 455  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  18840438 tgttcaatcaattgtgttttggaactttctctatgtatctgatgaaagcattgaagtgaca 18840378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 18252208 - 18252099
Alignment:
Q  220 acctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccctcttagatcccatt 319  Q
    |||||| ||||||| |||||| | |||||||||||||| | | ||| || |||||||  |||||||||||| |||||||||||||||| |  ||||||||    
T  18252208 acctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctccaatggacaagagaccaccctcctgaatcccatt 18252109  T
Q  320 aagtgaaatg 329  Q
     |||||||||    
T  18252108 tagtgaaatg 18252099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14285240 - 14285174
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||| ||||| |||||    
T  14285240 agagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaattccactcggcca 14285174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34984885 - 34984823
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||| ||||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  34984885 agagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactag 34984823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 22737158 - 22737099
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||| |||  |||||||| |||||||||| ||||||||||||||||||    
T  22737158 gaatcgaacctgagacattggggaggagcacacttccaagtcccaagccaataccactag 22737099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7918466 - 7918532
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| ||||||||| ||||||   ||| ||| |||||||||||||||||||||||||    
T  7918466 agagaatcgaacctaagaccttgaggaggagtgcactcccaggttccaagccaataccactaggcca 7918532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 16436692 - 16436631
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||    
T  16436692 aatcgaacatgagaccttgaggaggagcacact-ccaagtcccaagccaataccactaggcca 16436631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 87423 - 87486
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||| ||||||||||||||| |||||||| ||| |||  ||||||| ||||||||||||||||    
T  87423 gaatcaaacctgagaccttgaggaggagcacactcccagattccaaggcaataccactaggcca 87486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25979249 - 25979194
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaata 56  Q
    |||||||||||||||||||||||| |||||| | ||| |||| |||||||||||||    
T  25979249 agagaatcgaacctgagaccttgaggaggagaacactcccaaattccaagccaata 25979194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 30883196 - 30883257
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||| |||| ||||||||||| |||||||| ||| ||| || ||||||||||||||||||    
T  30883196 gagaattgaacttgagaccttgaggaggagcacactcccaggtcccaagccaataccactag 30883257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 17028264 - 17028324
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||| ||||||||||||||| |||||||| ||| |||||| |||| ||||||| ||||||    
T  17028264 gaatcaaacctgagaccttgaggaggagcacactcccaagtcccaacccaatacaactagg 17028324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 5390853 - 5390913
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||| || ||||||||  || |||||  ||||||||||||||||||||||    
T  5390853 aatcgaacctgagacctcgaggaggagca--ctcccaagccccaagccaataccactaggcca 5390913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16773886 - 16773827
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||| || |||||||| ||| ||| || ||||| |||||||||    
T  16773886 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccac 16773827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16115051 - 16114986
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||| ||||| || || | || |||||||||| |||||||||||||| |||||||    
T  16115051 agagaatcgaacctgaaaccttaaa-agaaacacacttccaagtcccaagccaataccattaggcca 16114986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 21549138 - 21549200
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| |||||| || | |||||||| ||| ||| || ||||||||||||||||||||||    
T  21549138 aatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaataccactaggcca 21549200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43442275 - 43442209
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| |||  |  ||| |||||||||||| ||||    
T  43442275 agagaatcgaacctgagaccttgaggaggagcacactcccagatctcaaaccaataccactatgcca 43442209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 16457888 - 16457823
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| |||| ||||||||||| |||||||| ||| | | || ||||||||||||||| ||||||    
T  16457888 gagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggcca 16457823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 10927000 - 10926895
Alignment:
Q  204 tacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccac 303  Q
    ||||||| ||| |||||||||| |||||||||||||| | |||||||| ||||| ||| |||||| |||||||| |||||||||||||| |||||| ||     
T  10927000 tacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgttgactcctccaatgaataagagatcat 10926901  T
Q  304 cctctt 309  Q
    ||||||    
T  10926900 cctctt 10926895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33700770 - 33700836
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| |||  ||||||||||||||||||||||||    
T  33700770 agagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggcca 33700836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36371549 - 36371483
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| ||||||||| |||||||| ||| ||| |||||||||||||||||||||||||    
T  36371549 agagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaataccactaggcca 36371483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 13441924 - 13442045
Alignment:
Q  206 catcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccc 305  Q
    ||||| ||| |||||||||| ||||| |||| |  || |||||||| ||||| ||| |||||| |||||||| ||||||||||||| ||||||| || ||    
T  13441924 catcagtctcctccacctctgaagaattcgatc--aagttctcattctgataaagagcttcccatgcatgttgactcctccaatgagcaagagatcatcc 13442021  T
Q  306 tcttagatcccattaagtgaaatg 329  Q
    || | ||||||||| |||||||||    
T  13442022 tcctggatcccattgagtgaaatg 13442045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4566627 - 4566561
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||| ||| |||||||| ||| ||| |||||||||||||| ||||||||||    
T  4566627 agagaatcgaacctgagaccctgaggaggagcacactcccaggttccaagccaatatcactaggcca 4566561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 6122870 - 6122810
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||||||||||||| |||||||| ||| |||||| ||||||| |||||||||||    
T  6122870 gaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactagg 6122810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3266003 - 3265948
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaata 56  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||    
T  3266003 agagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagtcaata 3265948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6650674 - 6650608
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||| |||| |||||||||||| ||   | ||||||||||||||||||||||    
T  6650674 agagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaataccactaggcca 6650608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8177179 - 8177245
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||| ||||||| |||||||| ||| |||  | ||||||||||||||||||||||    
T  8177179 agagaatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactaggcca 8177245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9165192 - 9165258
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||| ||||||||||| |||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  9165192 agagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggcca 9165258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 329
Target Start/End: Complemental strand, 23989014 - 23988904
Alignment:
Q  219 cacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccctcttagatcccat 318  Q
    ||||||| ||||||||||||   | ||||| || || || ||| |||||||||||||||||||||| |||||| ||||||| ||||||  | ||||||||    
T  23989014 cacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgttaactccttcaatgagcaagagatcacccttctggatcccat 23988915  T
Q  319 taagtgaaatg 329  Q
    | ||| |||||    
T  23988914 tgagttaaatg 23988904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 52116779 - 52116844
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| ||||||||||| |||| |||||||| ||| |||||| ||||||||||||||| ||||||    
T  52116779 gagaattgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggcca 52116844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10526902 - 10526842
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccact 61  Q
    ||||||||||| |||||||||||| |||||||| ||| ||| || ||||||||||||||||    
T  10526902 agagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaataccact 10526842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2220051 - 2219992
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||| || ||| |||| |||| || ||||||||||||||||||    
T  2220051 agagaatcgaacctgagacctcgaggagaagcacactttcaggttccaagccaataccac 2219992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 31794276 - 31794327
Alignment:
Q  16 agaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||| |||||||| ||| |||||| ||||||||||||||||||||||    
T  31794276 agaccttgaggaggagcacactcccaagtcccaagccaataccactaggcca 31794327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2799941 - 2799875
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| |||  |  |||||| ||||||||||||||    
T  2799941 agagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagcctataccactaggcca 2799875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11063635 - 11063573
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||| ||||||||| ||||| || |||| || || ||||||||||||||||||    
T  11063635 agagaatcgaacctaagaccttgaggaggaacacactttcaggtcccaagccaataccactag 11063573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15786317 - 15786379
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||||||| |||||||| ||| |||  | |||||||||||| |||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactag 15786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21547477 - 21547543
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||| |||| || ||||||||  || ||| || ||||||||||||||||||||||    
T  21547477 agagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaataccactaggcca 21547543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51703858 - 51703796
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||| || |||| |||||||| ||| |||  ||||||||||||||||||||    
T  51703858 agagaatcgaacctgaaactttgaggaggagcacactcccagattccaagccaataccactag 51703796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 8220236 - 8220181
Alignment:
Q  274 tgttaactcctccaatgaacaagagaccaccctcttagatcccattaagtgaaatg 329  Q
    |||| ||||||||| |||||||||||| |||||| | ||||||||| |||||||||    
T  8220236 tgttgactcctccagtgaacaagagacgaccctcctggatcccattgagtgaaatg 8220181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17745253 - 17745319
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||| |||||||| || |||||||| ||   || || ||||||||||||||||||||||    
T  17745253 agagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccactaggcca 17745319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 52336775 - 52336837
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| ||| | |||||||| ||| |||  | ||||||||||||||||||||||    
T  52336775 aatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaataccactaggcca 52336837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 4825049 - 4824992
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    ||||||| |||||||||||||||||||||||| ||| | | || ||||||||| ||||    
T  4825049 gagaatcaaacctgagaccttgaagaggagcacactccaaggtcccaagccaacacca 4824992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 31605846 - 31605903
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacca 59  Q
    ||||||||||| ||||||||||| |||||||| ||||| | || ||||||||| ||||    
T  31605846 gagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaacacca 31605903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35700033 - 35699965
Alignment:
Q  1 agagaatcgaacc--tgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||  |||||||||||  || |||| |||||||  ||||||| ||||||||||||||||    
T  35700033 agagaatcgaacccctgagaccttgagcagaagcacacttccagtttccaagtcaataccactaggcca 35699965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 38947471 - 38947512
Alignment:
Q  3 agaatcgaacctgagaccttgaagaggagcatacttccaagt 44  Q
    |||||||||||||||||||||| |||||||| ||| ||||||    
T  38947471 agaatcgaacctgagaccttgaggaggagcacactcccaagt 38947512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40810546 - 40810517
Alignment:
Q  1 agagaatcgaacctgagaccttgaagagga 30  Q
    ||||||||||||||||||||||||||||||    
T  40810546 agagaatcgaacctgagaccttgaagagga 40810517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3624659 - 3624593
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||    
T  3624659 agagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggcca 3624593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8794342 - 8794408
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||| ||||    
T  8794342 agagaatcgaacctgagaccctgaggaggagcacacttccaggttccaagccaataccactatgcca 8794408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12988507 - 12988441
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||| ||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  12988507 agaggatcgaacctgaaaccttgaggaggagcacacttccaggttccaagccaataccactaggcca 12988441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 23573328 - 23573240
Alignment:
Q  216 ctccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccacc 304  Q
    |||||||||| |||||||||||||  | || ||||| ||||| ||| |||||| |||||||| ||||||||||||||||| ||||||||    
T  23573328 ctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgttgactcctccaatgaacaaaagaccacc 23573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 24577809 - 24577936
Alignment:
Q  202 cttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagacc 301  Q
    ||||||||| ||| |||||| ||| ||||| ||||||   | ||||| || ||||| ||| |||| ||||||| || ||||||||||| |||||||||||    
T  24577809 cttacatcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagacc 24577908  T
Q  302 accctcttagatcccattaagtgaaatg 329  Q
    | |||| ||||||||||| | |||||||    
T  24577909 atcctcctagatcccattgactgaaatg 24577936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33017293 - 33017238
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaata 56  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  33017293 agagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 16852418 - 16852353
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||| || |||||||| ||| ||| || ||||||||||||||||||||||    
T  16852418 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggcca 16852353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 19703485 - 19703550
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||| |||||||| |||  || || ||||||||||||||||||||||    
T  19703485 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggcca 19703550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 11819852 - 11819792
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||||||||||||| |||||||| ||| |||||| ||||||| |||||||||||    
T  11819852 gaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactagg 11819792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 44780114 - 44780177
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||| ||||||||||||||| |||||||| ||| |||||| |||||||||| |||||||||||    
T  44780114 gaatcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaatgccactaggcca 44780177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 968441 - 968375
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||| || |||||||| ||| ||| || ||||||||||||||| ||||||    
T  968441 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggcca 968375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18540377 - 18540311
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| ||| || | ||| ||| || ||||||||||||||||||||||    
T  18540377 agagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggcca 18540311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35690061 - 35690127
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||  |||  | ||||||||||||||||||||||    
T  35690061 agagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaataccactaggcca 35690127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 2203570 - 2203505
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||| || ||||||||||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  2203570 gagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggcca 2203505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 2688980 - 2688851
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||| | ||| |||||||| | |||||||||| | | | |||||||| | |||||| |  |||| |||||||| |||||||||||||||| |||    
T  2688980 cctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaatagagtt--tcccatgcatgttgactcctccaatgaacatgag 2688883  T
Q  299 accaccctcttagatcccattaagtgaaatga 330  Q
    | ||||||| | |||||||||  |||||||||    
T  2688882 atcaccctcatggatcccattgggtgaaatga 2688851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 27750806 - 27750750
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||| |||||||| ||| |||||| ||||||| |||||||    
T  27750806 gaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccac 27750750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 33727873 - 33727933
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||||||||||||| |||||||| ||||||||||  ||| || |||||||||||    
T  33727873 gaatcgaacctgagaccttgaggaggagcacacttccaagtctcaaacctataccactagg 33727933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 637
Target Start/End: Original strand, 37330945 - 37331005
Alignment:
Q  577 agtgaaagtattatctgcattgctcactgaagaacttacatatttgcagtatctagttgtg 637  Q
    |||||||||||| |||||||| || |||||||||||||||||||||  |||||||| ||||    
T  37330945 agtgaaagtattctctgcattacttactgaagaacttacatatttggtgtatctagctgtg 37331005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3058046 - 3058105
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||  |||| ||||||||||    
T  3058046 agagaatcgaacctgagaccttgcagaggagcacactcccaagacccaaaccaataccac 3058105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17103458 - 17103399
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    |||||||||||| |||||| |||||||||| || |||| || ||||||||||||||||||    
T  17103458 agagaatcgaacatgagacattgaagaggaacaaactttcaggttccaagccaataccac 17103399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6536599 - 6536538
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccacta 62  Q
    ||||||| |||||||||||||||| |||||||| ||| | | || |||||||||||||||||    
T  6536599 agagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccacta 6536538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 11518877 - 11518938
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggc 65  Q
    ||||||||||| ||||||||| |||| | | ||| |||||||||||||| ||||||||||||    
T  11518877 gaatcgaacctaagaccttgaggaggggtacactcccaagttccaagcctataccactaggc 11518938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15948046 - 15948105
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||  ||| | || |||||||||||| |||||| |||||||||||||||    
T  15948046 agagaatcgaacctatgacatcgaggaggagcatactcccaagtcccaagccaataccac 15948105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 29858049 - 29858112
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||| || |||||||| ||| ||  || ||||||||||||||| ||||||    
T  29858049 gaatcgaacctgagacctcgaggaggagcacactccctggtcccaagccaataccaccaggcca 29858112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 5264611 - 5264557
Alignment:
Q  13 ctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||| || |||||||| | | ||| |||||||||||||||||||||||||    
T  5264611 ctgagacctcgaggaggagcacattcccaggttccaagccaataccactaggcca 5264557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 28783138 - 28783080
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||| ||||||||||| |||||||| ||| ||| ||  ||||||||||||||    
T  28783138 gagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccac 28783080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29431090 - 29431024
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||| |||  | |||||||| ||| |||||| ||||||||||||| | ||||||    
T  29431090 agagaatcgaacctgaggcctcaaggaggagcacactcccaagtcccaagccaataccgccaggcca 29431024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 26377833 - 26377776
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgat 256  Q
    |||| ||||||| ||| |||||||| | |||||||||||||||| |||||||| ||||    
T  26377833 cctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27093358 - 27093424
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  27093358 agagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggcca 27093424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 365886 - 366008
Alignment:
Q  206 catcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccc 305  Q
    ||||||||| |||||||||| |||||||||||| | | ||||| || ||||| ||| ||||| | | ||||| |||| ||||||||||| ||||||||||    
T  365886 catcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagcttccat-gtatgttgactcttccaatgaacaggagaccaccc 365984  T
Q  306 tcttagatcccattaagtgaaatg 329  Q
    ||   ||||||||| |||||||||    
T  365985 tccgggatcccattgagtgaaatg 366008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 8170747 - 8170685
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||  ||||||| ||| ||||||| |||||||||||||||||||||    
T  8170747 aatcgaacctgagaccttgagtaggagcacactcccaagtttcaagccaataccactaggcca 8170685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16354889 - 16354955
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||| ||| |||||||| |||  || |||||||||||||||||||||||||    
T  16354889 agagaatcgaacctgagaccctgaggaggagcacactcacaggttccaagccaataccactaggcca 16354955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14186726 - 14186661
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| || |||| || ||||| ||||||||||||||||    
T  14186726 agagaatcgaacctgagaccttgaggaggagcacac-tccaggtcccaagacaataccactaggcca 14186661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30311385 - 30311319
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| |||  | ||||||| ||||||||||||||    
T  30311385 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctataccactaggcca 30311319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32651435 - 32651501
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||| |||||| ||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  32651435 agagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccactaggcca 32651501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37788462 - 37788528
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| | | |||||||| |||||||||| |||||    
T  37788462 agagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggcca 37788528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53413024 - 53412962
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    ||||||| |||||||||||||||| |||||||| ||| ||| ||| |||||||||||||||||    
T  53413024 agagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactag 53412962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 14339688 - 14339623
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||| |||| |||||||| ||| |||| | ||||||||||||||| ||||||    
T  14339688 gagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggcca 14339623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 8075127 - 8075187
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||||| ||||||| |||||||| ||| |||||| ||||||| |||||||||||    
T  8075127 gaatcgaacctgaaaccttgaggaggagcacactcccaagtcccaagcctataccactagg 8075187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 27923043 - 27923106
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||  ||| |||||||| ||||||| || ||||||||||||||| ||||||    
T  27923043 gaatcgaacctgagactatgaggaggagcacacttccatgtcccaagccaataccaccaggcca 27923106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 47236969 - 47237034
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||| |||||||||||||||||||| ||| ||  || |||| |||||||||| ||||||    
T  47236969 gagaatcgaacatgagaccttgaagaggagcacactcccgggtcccaaaccaataccaccaggcca 47237034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28703401 - 28703433
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagca 33  Q
    |||||||||||||||||||||||||||||||||    
T  28703401 agagaatcgaacctgagaccttgaagaggagca 28703433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39253776 - 39253744
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagca 33  Q
    |||||||||||||||||||||||||||||||||    
T  39253776 agagaatcgaacctgagaccttgaagaggagca 39253744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 8051290 - 8051227
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||| |||||||| || ||| |||||||| ||| || ||||||||||||||| ||||||    
T  8051290 gaatcgaacttgagacctcgaggagaagcatactgccaggtcccaagccaataccaccaggcca 8051227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10445136 - 10445203
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaa-taccactaggcca 67  Q
    ||||||||||||||||||||| || |||||||| ||| ||| || ||||||||| | |||||||||||    
T  10445136 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaattgccactaggcca 10445203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 45308903 - 45308958
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||| || ||||||||||||  ||||| |||| ||||||||||    
T  45308903 aatcgaacctgagacctcgaggaggagcatactcacaagtcccaaaccaataccac 45308958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4222220 - 4222154
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| |||| |||| |||||||| ||| |||  | ||||||||||||||||| ||||    
T  4222220 agagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaataccactaagcca 4222154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 8796090 - 8796132
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaag 43  Q
    |||||||||||| ||||||||||| |||||||||||| |||||    
T  8796090 agagaatcgaacttgagaccttgaggaggagcatactcccaag 8796132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 37504377 - 37504439
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||| ||||||| | |||   |||||| ||||||| |||||||||||||||||||||    
T  37504377 aatcgaacctcagaccttaaggagagacatactcccaagtttcaagccaataccactaggcca 37504439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46518707 - 46518641
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||| ||||||| |||||||| ||| |||  | ||||||||||||||||| ||||    
T  46518707 agagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactatgcca 46518641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 47454615 - 47454676
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttc-caagccaataccactag 63  Q
    |||||||||||||||||||| || |||||||| || |||||| || |||||||||||||||||    
T  47454615 gagaatcgaacctgagacctcgaggaggagcacac-tccaagatctcaagccaataccactag 47454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 8368797 - 8368862
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||| |||||||||||| || || ||||| ||| ||| ||| |||| ||||||||||||||||    
T  8368797 gagaatcaaacctgagacctcgaggatgagcacactaccaggtttcaagtcaataccactaggcca 8368862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 280295 - 280419
Alignment:
Q  204 tacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccac 303  Q
    ||||||| ||| |||||||||| |||||||||||||| | |||||||| ||||| ||| |||| | |||||||| | ||||||||||||| ||||||||     
T  280295 tacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaac-agagaccat 280393  T
Q  304 cctcttagatcccattaagtgaaatg 329  Q
    |||  | ||||||||| |||||||||    
T  280394 ccttctggatcccattgagtgaaatg 280419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11251166 - 11251100
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||    
T  11251166 agagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccactaagcca 11251100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 35682008 - 35681910
Alignment:
Q  206 catcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccacc 304  Q
    ||||| ||| |||||||||| |||||||||||||||| ||||| || ||||| ||| ||| |  |||||||| |||||| |||||||||||||||||||    
T  35682008 catcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgttgactccttcaatgaacaagagaccacc 35681910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 40416387 - 40416453
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||| | |||||||||||| ||| |||||||| ||||||||||||||||    
T  40416387 agagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggcca 40416453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42327392 - 42327458
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  42327392 agagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggcca 42327458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 199 - 332
Target Start/End: Original strand, 32162243 - 32162375
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||||||||| | ||| ||||| |||| || ||||| |||   | |||||||| ||||| ||| |||||| |||||||| |||| || ||||||||||||    
T  32162243 cctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttgactc-tctaatgaacaagag 32162341  T
Q  299 accaccctcttagatcccattaagtgaaatgaga 332  Q
    ||||||||| | ||||||||| ||||||||||||    
T  32162342 accaccctccttgatcccattgagtgaaatgaga 32162375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 21195676 - 21195736
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactagg 64  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||    
T  21195676 gaatcgaacctgagaccttgaggaggagcacactcccaagttccaagcctataccactagg 21195736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42922494 - 42922427
Alignment:
Q  1 agagaatcgaacctgagacctt-gaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||||| || |||||||| ||| ||| |||||||||||||||||||||||||    
T  42922494 agagaatcgaacctgagacctttgaggaggagcacactcccaggttccaagccaataccactaggcca 42922427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11062439 - 11062373
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||||||||||||| ||| |||| ||| |||||||||||||||||| ||||||||||    
T  11062439 agagaatcaaacctgagaccttgaggagaagcacactcccaagttccaagccaatatcactaggcca 11062373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 23052521 - 23052586
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||| ||| |||| ||| |||||| ||||||||||||||| ||||||    
T  23052521 gagaatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggcca 23052586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 29503349 - 29503284
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||| |||||||| ||| ||| || |||| |||||||||||||||||    
T  29503349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggcca 29503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 12086129 - 12086192
Alignment:
Q  4 gaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||| |||||||||| |||||||| ||||||| || ||||||||||||||| ||||||    
T  12086129 gaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggcca 12086192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 31636096 - 31635997
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| ||| |||||||||| ||||||||||  || | ||||||||  |||| |||  ||||| |||||||| ||||||||||||||||||||    
T  31636096 cctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactcctccaatgaacaagag 31635997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 37480153 - 37480088
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||||| |||||||| |||  || || ||||||||||||||| ||||||    
T  37480153 gagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggcca 37480088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4262299 - 4262354
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaata 56  Q
    |||||||||||||||||||||||| |||||||| ||| ||| || |||||||||||    
T  4262299 agagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19322847 - 19322785
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||| |||| ||||||||||||||||||| ||| ||| || |||| |||||||||||||    
T  19322847 agagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaataccactag 19322785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42602633 - 42602567
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||| |||||||||  ||||||| ||| ||| || ||||||||||||||||||||||    
T  42602633 agagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggcca 42602567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 27952653 - 27952721
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcc 267  Q
    |||| ||||||| ||| |||||||||| |||||||||||||| | |||||||| ||||| ||| |||||    
T  27952653 cctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcc 27952721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7799032 - 7799091
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||| |||||| || || |||||||| ||| |||||| |||||||||||||||    
T  7799032 agagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaataccac 7799091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 22011186 - 22011087
Alignment:
Q  206 catcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccaccc 305  Q
    ||||| ||| ||||||||||||||||||||||||  | |||||||| | ||| |||  ||| | || ||||| |||||| | |||||||||| |||||||    
T  22011186 catcactctcctccacctctaaagaactcgaccctgagttctcattctaataaagaatttctcatgtatgttgactccttcgatgaacaagataccaccc 22011087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33569855 - 33569922
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaa-taccactaggcca 67  Q
    ||||||||||||||||||||| || || ||||| |||||||||| | ||||||| |||||||| ||||    
T  33569855 agagaatcgaacctgagacctcgaggaagagcacacttccaagtcctaagccaattaccactaagcca 33569922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1729895 - 1729833
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||| || || |||||| || |||||||| ||| |||||| ||||||||||||||||||    
T  1729895 agagaatcaaatctaagacctagaggaggagcacactcccaagtcccaagccaataccactag 1729833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4060211 - 4060277
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||| ||||| ||| |||| |||  || ||| ||| |||||||||||||||||    
T  4060211 agagaatcgaacctgagatcttgaggagaagcacactctcaggtttcaaaccaataccactaggcca 4060277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6658461 - 6658395
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||| |||||| |||| ||| |||| ||||||| ||| ||| |||||| ||||||||||    
T  6658461 agagaatcgaacatgagactttgaggagaagcacacttccaggttacaaaccaatatcactaggcca 6658395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 13803570 - 13803512
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||||||||||||| |||||||| ||| | ||||  |||||||||| ||||||    
T  13803570 aatcgaacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcactag 13803512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16918575 - 16918641
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||| ||||| ||||||||| |||||||| ||| |||  | |||| |||||||||||||||||    
T  16918575 agagaatccaacctaagaccttgaggaggagcacactcccagatcccaaaccaataccactaggcca 16918641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 18945731 - 18945657
Alignment:
Q  230 aactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagagaccacc 304  Q
    ||||||| ||| |||||||||| ||||  |||  ||| | | ||||||||||||| |||||||||||||||||||    
T  18945731 aactcgatcccgaattctcattctgattaagagtttctcattcatgttaactcctgcaatgaacaagagaccacc 18945657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 36648613 - 36648555
Alignment:
Q  270 tgcatgttaactcctccaatgaacaagagaccaccctcttagatcccattaagtgaaat 328  Q
    |||||| | |||| ||||||||| |||||||||||||||||||||| ||| | ||||||    
T  36648613 tgcatgatgactcttccaatgaataagagaccaccctcttagatcctattgattgaaat 36648555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 39715070 - 39715012
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    |||||||||||||||||||| || |||||||| ||| ||| || ||||| |||||||||    
T  39715070 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccac 39715012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 17737625 - 17737682
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccacta 62  Q
    |||||||| ||||||||||| |||||||| ||| ||||||  ||| ||||||||||||    
T  17737625 aatcgaacatgagaccttgaggaggagcacactcccaagtcacaaaccaataccacta 17737682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 10460 - 10352
Alignment:
Q  199 cctcttacatcaatctactccacctctaaagaactcgaccccaaattctcattatgatagagatcttcccttgcatgttaactcctccaatgaacaagag 298  Q
    |||| ||||||| |||  ||||||||||| ||| | |||||||| |||||||||||||| ||| |||||| || || || ||||||||||||||||||||    
T  10460 cctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactcctccaatgaacaagag 10361  T
Q  299 accaccctc 307  Q
    || ||||||    
T  10360 acaaccctc 10352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 94976 - 95034
Alignment:
Q  9 gaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||    
T  94976 gaacctgagaccttgaggaggagcacactcccaggttccaagccaataccactaggcca 95034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42517 - 42583
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||||||||  ||| |||||||||||| |||  ||||||| ||||||||||||||||    
T  42517 agagaatcgaacctgagactctgaggaggagcatactcccagattccaagtcaataccactaggcca 42583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 6921 - 6982
Alignment:
Q  6 atcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    |||||||||||||| |||| |||||||| ||| || ||| ||||||||||||||||||||||    
T  6921 atcgaacctgagactttgaggaggagcacactccccagtcccaagccaataccactaggcca 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15320 - 15379
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    ||||||||||||||||||||| || |||||||| ||| ||| || |||||||||||||||    
T  15320 agagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccac 15379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11607 - 11541
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||||||||||||||||| || |||||||| ||| |||  | ||||||||||||||| ||||||    
T  11607 agagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccaggcca 11541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 25348 - 25406
Alignment:
Q  5 aatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    ||||||||||||||||||||  ||||||| ||| ||||||  |||||||||||||||||    
T  25348 aatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaataccactag 25406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 15775 - 15840
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||| ||| ||||||||||| |||||||||||| | || | ||||||||||||||| ||||||    
T  15775 gagaatcaaacttgagaccttgaggaggagcatactccaaaatcccaagccaataccaccaggcca 15840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 81562 - 81623
Alignment:
Q  2 gagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactag 63  Q
    |||||||||| |||||||||||| |||||||| |||||||  |||||| |||||| ||||||    
T  81562 gagaatcgaatctgagaccttgaggaggagcacacttccagattccaaaccaatatcactag 81623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 15743 - 15683
Alignment:
Q  270 tgcatgttaactcctccaatgaacaagagaccaccctcttagatcccattaagtgaaatga 330  Q
    |||||||| |||||||||||||||| ||||||||||||  || ||||||| | ||||||||    
T  15743 tgcatgttgactcctccaatgaacaggagaccaccctccaaggtcccattgaatgaaatga 15683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13043 - 13102
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccac 60  Q
    |||||||||||||||||||||||| |||||||| ||| |||  |  ||||||||||||||    
T  13043 agagaatcgaacctgagaccttgaggaggagcacactcccagatctcaagccaataccac 13102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41630 - 41696
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaataccactaggcca 67  Q
    ||||||| ||||||||||||| || ||||||||||||  ||  |  |||||||||||||||||||||    
T  41630 agagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggcca 41696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 49385 - 49328
Alignment:
Q  1 agagaatcgaacctgagaccttgaagaggagcatacttccaagttccaagccaatacc 58  Q
    |||||||||||||||| |||| ||||||||||| |||  ||| | |||||||||||||    
T  49385 agagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaatacc 49328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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