View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_10 (Length: 486)
Name: NF21660_low_10
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Complemental strand, 41468935 - 41468477
Alignment:
| Q |
10 |
aatatctaagagaagttacaaaccaattttattaatggttgatctatagttgagaaattttaaaataaaagagaatctgagttgtaaaaatcaatatatg |
109 |
Q |
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| T |
41468935 |
aatatctaagagaagttacaaaccaattttattaatggttgatctatagttgagaaattttaaaataaaagagaatctgagttgtaaaaatcaatatatg |
41468836 |
T |
|
| Q |
110 |
gtatgttggttgcacaatggttgatccatcgttgtgaaattttgaaatcaagagttgtccattttattgtctcaaaagattgttgaaatatcatttctct |
209 |
Q |
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| T |
41468835 |
gtatgttggttgcacaatggttgatccatcgttgcgaaattttgaaatcaagagttgtccatttaattgtctcaaaagattgttgaaatatcatttctct |
41468736 |
T |
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| Q |
210 |
aaataatacccccatggttgaatattctcgaaagactaagctatggtattaccg-------tgtttggagtaaagttcatgtccttaacttcacgaggct |
302 |
Q |
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| T |
41468735 |
aaataatacccccttggtcgaatattctcgaaagactaagctatggtattaccgatatgaatgtttggagtaaagttcatgtccttaacttcacgaggct |
41468636 |
T |
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| Q |
303 |
actgaatcgattgtgacactagtaatgaaaacctggtaaaatcctttctgtatatcagaaataaactcacttgtgttgtgtttcaggaggactcttatta |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468635 |
actgaatcgattgtgacactagtaatgaaaacctggtaaaatcctttctgtatatcagaaataaactcacttgtgttgtgtttcaggaggactcttatta |
41468536 |
T |
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| Q |
403 |
gaagctaagatacaaaacattatgacttaaagacagacacatacaacagtttttccatg |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41468535 |
gaagctaagatacaaaacattatgacttaaagacagacacatacaacagtttttccatg |
41468477 |
T |
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