View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_12 (Length: 472)
Name: NF21660_low_12
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 10202169 - 10201790
Alignment:
| Q |
1 |
acatgcctgttatagaaatcaaccatgaagttattgtcaatctcatcgttcgcagtttcttccccagacaacgacattaaaatctctttttccttagatt |
100 |
Q |
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| T |
10202169 |
acatgcctgttataaaaatcaaccatgaagttattgtcaatctcatcattcgcagtctcttccccggacaacgacattaaaatctctttttccttagatt |
10202070 |
T |
|
| Q |
101 |
gtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaagttaattcgaggacattttgaaatgcgtaggct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10202069 |
gtactccacttttatcaatttgttcattttctaatttagacgacaacaaaaatctaatgattgtcaagttaattcgagggcattttgaaatgcgtaggct |
10201970 |
T |
|
| Q |
201 |
ccaagcaacagcctcgcggtcatccggccctccnnnnnnnngtgttgcaacattttgaatggtttcagattctattagttccgagaaaccaaatgacgta |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10201969 |
ccaagcaacagcctcgcggtcatccggccctccaaaaaaaagtgttgcaacattttgaatggtttcagattctattagttccgagaaaccaaatgatgta |
10201870 |
T |
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| Q |
301 |
gtaagtcctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttc |
380 |
Q |
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| T |
10201869 |
gtaagtcctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttc |
10201790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 373 - 472
Target Start/End: Original strand, 10201620 - 10201719
Alignment:
| Q |
373 |
ataccttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatct |
472 |
Q |
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| T |
10201620 |
ataccttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatct |
10201719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 51741368 - 51740992
Alignment:
| Q |
1 |
acatgcctgttatagaaatcaaccatgaagttattgtcaatctcatcgttcgcagtttcttccccagacaacgacattaaaatctctttttccttagatt |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||| || ||||||||||||||| || |||| |||||||| || || ||||||||||| |||||||| | | ||| |
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| T |
51741368 |
acatacctgttataaaaatcaaccataaaagtattgtcaatctcat---tcacagtctcttcccctgataaagacattaaaatttctttttcatcatatt |
51741272 |
T |
|
| Q |
101 |
gtactccacttttatcaatttgttcattttctaatttagacga---caacaaaaatctaatgattgtcaagttaattcgaggacattttgaaatgcgtag |
197 |
Q |
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|||||||||||| |||| ||||| || | | | |||||| ||| |||||||| |||||||||| ||||| ||||| ||||||||||| | ||| |
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| T |
51741271 |
gtactccacttt---caatatgttctttatgtgacaaagacgaagacaaaaaaaatctgatgattgtcagattaatgcgagggcattttgaaattcttag |
51741175 |
T |
|
| Q |
198 |
gctccaagcaacagcctcgcggtcatccggccctccnnnnnnnngtgttgcaacattttgaatggtttcagattctattagttccgagaaaccaaatgac |
297 |
Q |
| |
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||||||||| | |||||| || || ||||| ||||| |||||||||| |||| | | |||||| || | || ||||||||| | |
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| T |
51741174 |
gctccaagctatagcctcacgatcgtccgggcctccaaagaaaagtgttgcaacgtttttcgtactatcagatgtaatcaattgtgagaaaccagggacc |
51741075 |
T |
|
| Q |
298 |
gtagtaagtcctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttc |
380 |
Q |
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||| | |||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
51741074 |
ttagacatccctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttc |
51740992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 51740827 - 51740897
Alignment:
| Q |
378 |
ttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaaga |
448 |
Q |
| |
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||||||| |||||||||||||||||| || |||| |||| |||| || ||||||| ||| |||||||||| |
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| T |
51740827 |
ttcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaaga |
51740897 |
T |
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