View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_low_13 (Length: 468)

Name: NF21660_low_13
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_low_13
NF21660_low_13
[»] chr1 (2 HSPs)
chr1 (13-450)||(3675423-3675857)
chr1 (214-255)||(3078928-3078969)
[»] chr3 (2 HSPs)
chr3 (15-76)||(48553314-48553375)
chr3 (333-448)||(48552909-48553024)
[»] chr4 (2 HSPs)
chr4 (220-261)||(1573924-1573965)
chr4 (13-61)||(51938995-51939043)
[»] chr8 (2 HSPs)
chr8 (221-261)||(27160963-27161003)
chr8 (222-262)||(34444304-34444344)
[»] chr6 (1 HSPs)
chr6 (219-259)||(5933231-5933271)
[»] chr5 (1 HSPs)
chr5 (214-262)||(35023715-35023763)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Original strand, 3675423 - 3675857
Alignment:
Q  13 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttccaaacaacannnnnnnnn 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||             
T  3675423 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttcaaaacaacatttttttag 3675522  T
Q  113 nnnnnnnnnnnnccacaaaaattgtggtattttgtcatggaaaaaagtaatcttatagcatatgtttggttcggcaatgaaattcataaaatcccgatga 212  Q
                |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  3675523 atatatttttt-ccacaaaaattgtggtattttgtcatggaaaaaagtaatctta--gcatatgtttggttcggcaatgaaattcataaaattccgatga 3675619  T
Q  213 tccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc 312  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675620 tccatcgtgattttgacaaaaactatactttagagctttaacaaaatcatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttc 3675719  T
Q  313 gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675720 gtaaactaaaagggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaa 3675819  T
Q  413 cccttgtctaagtttatcatcaacaaaacccttataaa 450  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3675820 cccttgtctaagtttatcatcaacaaaacccttataaa 3675857  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 3078969 - 3078928
Alignment:
Q  214 ccatcgtgattttgacaaaaattatactttaaagcttcaaca 255  Q
    ||||| |||||||||||||||||| ||||| |||||||||||    
T  3078969 ccatcatgattttgacaaaaattacactttgaagcttcaaca 3078928  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 48553375 - 48553314
Alignment:
Q  15 tatccaattaacttcacaagatgtggatgacttagttgtccaagaaatataatctctgccta 76  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||    
T  48553375 tatccaattaacttgacaagatgtggatgtctaagctgtccaagaaatataatctctgccta 48553314  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 448
Target Start/End: Complemental strand, 48553024 - 48552909
Alignment:
Q  333 agaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcat 432  Q
    ||||| |||||||||||||| || ||||||||  ||||||||||||  |  | ||| ||||| | || ||||||||| || || ||||| ||||||||||    
T  48553024 agaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttcaaaccatgtctgagtttatcat 48552925  T
Q  433 caacaaaacccttata 448  Q
    ||||||||||||||||    
T  48552924 caacaaaacccttata 48552909  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 1573965 - 1573924
Alignment:
Q  220 tgattttgacaaaaattatactttaaagcttcaacaaaatta 261  Q
    |||||||||||||| |||||||||||||||| | ||||||||    
T  1573965 tgattttgacaaaagttatactttaaagctttatcaaaatta 1573924  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 51938995 - 51939043
Alignment:
Q  13 aatatccaattaacttcacaagatgtggatgacttagttgtccaagaaa 61  Q
    |||||||||| ||||||||||| ||| |||| |||||||| ||||||||    
T  51938995 aatatccaatcaacttcacaaggtgttgatgtcttagttgaccaagaaa 51939043  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 27161003 - 27160963
Alignment:
Q  221 gattttgacaaaaattatactttaaagcttcaacaaaatta 261  Q
    ||||||| ||||| ||||||||| |||||||||||||||||    
T  27161003 gattttggcaaaagttatactttgaagcttcaacaaaatta 27160963  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 34444304 - 34444344
Alignment:
Q  222 attttgacaaaaattatactttaaagcttcaacaaaattat 262  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  34444304 attttgataaaaattacactttaaaacttcaacaaaattat 34444344  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 5933271 - 5933231
Alignment:
Q  219 gtgattttgacaaaaattatactttaaagcttcaacaaaat 259  Q
    |||||||||||||||||||||||||  ||||| ||||||||    
T  5933271 gtgattttgacaaaaattatactttgtagctttaacaaaat 5933231  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 35023763 - 35023715
Alignment:
Q  214 ccatcgtgattttgacaaaaattatactttaaagcttcaacaaaattat 262  Q
    |||| |||| ||||||||||  |||||||||||||||||| ||||||||    
T  35023763 ccatggtgactttgacaaaagctatactttaaagcttcaataaaattat 35023715  T

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