View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_low_14 (Length: 456)
Name: NF21660_low_14
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 148 - 401
Target Start/End: Original strand, 47669864 - 47670108
Alignment:
| Q |
148 |
ctttcttataattagcacacatttagatcgatccttatcttatttgaaatatactaatgaatacttttctagagcaaggtatgtacttcaatttgtgaat |
247 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||| || |||||| | ||| |
|
|
| T |
47669864 |
cttttttatgattagcacacatttagattgatccttatcttatttgaagtatgctaatgaatattttac---agca---------ctccaatttataaat |
47669951 |
T |
|
| Q |
248 |
gatttgacatacattaatcctg---gttcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgt |
344 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||||||| || | ||| |||||||| |||||| ||||||| |
|
|
| T |
47669952 |
gatttgacatacattaatcctgtaagttcatacaccgtagacattcttatcatgttaatttgaaagtttcgtaatgattttggccacttgaagagcatgt |
47670051 |
T |
|
| Q |
345 |
tgctgtgtgaagctacttcatcgagtttccctcattctacattgctaactcatgtta |
401 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
47670052 |
tgctgcgtgaagcttcttcatcatatttccctcattctaaattgctaacttatgtta |
47670108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 270 - 400
Target Start/End: Complemental strand, 8747695 - 8747565
Alignment:
| Q |
270 |
gttcacacacggtagacattcttatgatgttagtttgaaagtctcatcatggttttggccccttgaatagcatgttgctgtgtgaagctacttcatcgag |
369 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| | |
|
|
| T |
8747695 |
gttcacacaccgtggacattcatatcatgttaatttgaaagtctcatcatggttttggccccttgaagagcatgttgctacgtgaagcttcttcatcaaa |
8747596 |
T |
|
| Q |
370 |
tttccctcattctacattgctaactcatgtt |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
8747595 |
tttccctcattctacattgctaactaatgtt |
8747565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 7961619 - 7961576
Alignment:
| Q |
21 |
gaggcaatagaatttgtgatgattaatgaaggattctgcctaat |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7961619 |
gaggcaatagaatttgtgatgattaatgaaagattctgcctaat |
7961576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 46073458 - 46073525
Alignment:
| Q |
78 |
gatagagtacctatgagtgtgtttgtctaagagcaagcctgatattaagcatggtgagttactacaac |
145 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||| | | |||| ||||| |||||||||||| |
|
|
| T |
46073458 |
gatagagtatctaagagagtgtttgtctaagagcaagcccggtgataagtatggtaagttactacaac |
46073525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University