View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_15 (Length: 453)
Name: NF21660_low_15
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 44148755 - 44149189
Alignment:
| Q |
1 |
cacagaacatcataatatatcgtgaaacgtgcaggacgtcggatatgtaattagcatatcttagcaactagtttgcttagggtggtaagtcaaatttgca |
100 |
Q |
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| T |
44148755 |
cacaaaacatcataatatatcgtgaaacgtgcaggacgtcggatatgtaattagcatatcttagcaactagtttgcttagggtggtaagtcaaatttgca |
44148854 |
T |
|
| Q |
101 |
tgttttgttaaaattattatgcctgatacctcaaacatagtttacgcaagcaaaaaacaaagtaccctccaagctagcaggacttctccttctgtatcaa |
200 |
Q |
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| T |
44148855 |
tgttttgttaaaattattatgcctgatgcctcatacatagtttacgcaagcaaaaaaaaaagtaccctccaagctagcaggacttctccttctgtatcaa |
44148954 |
T |
|
| Q |
201 |
atgacatcacatcaacaccaacaataggggaacatgagttaagggtcatcacgttacgaattaatggctggtcctctccttgtagagttaccagattagc |
300 |
Q |
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| T |
44148955 |
atgacatcacatcaacaccaacaataggggaacatgagttaagggtcatcacgttacgaattaatggctggtcctctccttgtagagttaccagattagc |
44149054 |
T |
|
| Q |
301 |
aatctgtaagaaagtgagaattttttgttcaaaaacgataatactgatcaacaatcaaggatattcagctatgaaaagatggtgtgttggacctgaatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
44149055 |
aatctgtaagaaagtgagaattttttgttcaaaaacgataatacggatcaacaatcaaggatattcggctatgaaaagatggtgcgttggacctgaatca |
44149154 |
T |
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| Q |
401 |
cgggatcatgggtaggttcagggaagtgacctttg |
435 |
Q |
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| T |
44149155 |
cgggatcatgggtaggttcagggaagtgacctttg |
44149189 |
T |
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