View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_16 (Length: 448)
Name: NF21660_low_16
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 16053161 - 16053343
Alignment:
| Q |
20 |
aggatgacttgccggcatttgctgtaaatgtagaagaatcccttctcacaattaaggtgttgttggcgaggaatctaggctcatatttgctctctttcca |
119 |
Q |
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| T |
16053161 |
aggatgacttgccggcatttgctgtaaatgtagaagaatcccttctcacaattaaggtgttgttggcgaggaatctaggctcatatttgctctctttcca |
16053260 |
T |
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| Q |
120 |
ctcatatgagactcattcaagagcttcaaaatattcatctccaatctaactttctttgttcaaatgcatcatataatgtttga |
202 |
Q |
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| T |
16053261 |
ctcatatgagactcattcaagagcttcaaaatattcatctccaatctaactttctttgttcaaatgcatcatataatgtttga |
16053343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 279 - 444
Target Start/End: Original strand, 16053351 - 16053511
Alignment:
| Q |
279 |
tttaggtggttagggatggaaatcaacctcttgtctgatctattttgtttattttccagctttcttctttggaagtgttcgtcactatcaacaccgacaa |
378 |
Q |
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| T |
16053351 |
tttaggtggttaggggtggaaatcaacctcttgtctgatctattttgtttattttccggctttcttctttggaagtgttcgtcactatcaacatcgacga |
16053450 |
T |
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| Q |
379 |
acattggtttgacatttggcggtgtcattaatttggaagttgtataacgattccttcttctcactc |
444 |
Q |
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| T |
16053451 |
acattggtttgacatttggcggtgtca-----ttggaagttgtataacgattccttcttatcactc |
16053511 |
T |
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