View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_low_17 (Length: 431)
Name: NF21660_low_17
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 27722671 - 27723060
Alignment:
| Q |
16 |
aatatgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27722671 |
aatatgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtagg |
27722770 |
T |
|
| Q |
116 |
caaacatttacgacatatgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27722771 |
caaacatttacgacatatgcatcaaatcagatttttgactttaggcagtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagtt |
27722870 |
T |
|
| Q |
216 |
ggatcaattaattcatcaatacagtgtcgataagcacttctaacttcatcaatacgcttatcaagacagtgtcgatattcacttttaactgaaaacagca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27722871 |
ggatcaattaattcatcaatacagtgtcgataagcacttctaacttcatcaatacgcttatcaagacagtgtcaatattcacttttaactgaaaacagca |
27722970 |
T |
|
| Q |
316 |
attcctttatttttatttttctaataccattggtgtatgtatatagttacataggtttctagttttatggaatggaggtgaaagttgttg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27722971 |
attcctttatttttatttttctaataccattggtgtatgtatatagttacataggtttctagttttatggaatggaggtgaaagttgttg |
27723060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 27734624 - 27735033
Alignment:
| Q |
20 |
tgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacat--ggactgtttactgcaagatcacgcaaccgagatctggtaggca |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
27734624 |
tgacaaaatgagtatgcaatcttcatcaaaggtattacacataacagagttacatatggacagtttactgcaagatcatgcaacctagatctcgtaggca |
27734723 |
T |
|
| Q |
118 |
aacatttacgacatatgcatcaaatcagatttt-----tgac---------tttaggcggtgcccctaactttcaaatgagattccatcgaccatgaatt |
203 |
Q |
| |
|
| |||||||||||||| ||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||||||| | | |
|
|
| T |
27734724 |
accatttacgacatatctatcaaatcagattttggcagtgaccataacagagtttggccgtgaccctaactttcaaatgagattccatcgaccatggact |
27734823 |
T |
|
| Q |
204 |
ctaaggtgagttggatcaattaattcatcaatacagtg---tcgataagca-cttctaacttcatc-aatacgcttatcaagacagtgtcgatattcact |
298 |
Q |
| |
|
|| | ||||||||||||||||||| |||||||||||| || | | | |||| ||| | |||||| |||||| ||||||||||||||| ||| |
|
|
| T |
27734824 |
ttaggatgagttggatcaattaatttatcaatacagtgtattctaactgtatattctccagtcaccaaatacgtttatcaggacagtgtcgatatttact |
27734923 |
T |
|
| Q |
299 |
tttaactgaaaacagcaattcctttatttttatttttctaataccattggtgtatgtatatagttacataggtttctagttttatggaatggaggtgaaa |
398 |
Q |
| |
|
| |||||||||||| ||||| | ||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
27734924 |
tctaactgaaaacaacaatttcattatt----ttcttttaataccattggtgtatgtatatagttacataggtttttagttttatggaatggagatgaaa |
27735019 |
T |
|
| Q |
399 |
gttgttggtttgtt |
412 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
27735020 |
gttgtaggtttgtt |
27735033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 27722521 - 27722557
Alignment:
| Q |
34 |
tgcaatcttcatcaaaggtatcacacataacagagtt |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27722521 |
tgcaatcttcatcaaaggtatcacacataacacagtt |
27722557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 14680403 - 14680641
Alignment:
| Q |
20 |
tgacaaaatgagcatgcaatcttcatcaaaggtatcacacataacagagttacatggactgtttactgcaagatcacgcaaccgagatctggtaggcaaa |
119 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14680403 |
tgacaaaaggagtatgcaatcttcatcaaaggtatcaaacataacacatttacatggactgtttattgcaagatcacgcaaccgagatctggtaggcaaa |
14680502 |
T |
|
| Q |
120 |
catttacgacatatgcatcaaatcagatttttgactttaggcggtgcccctaactttcaaatgagattccatcgaccatgaattctaaggtgagttggat |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | || | |||||||||| |
|
|
| T |
14680503 |
catttacgacatatctgccaaatcagatttttgactttagctggtgcccataactttcaaatgagattccatcgaccatgaactatatgatgagttggat |
14680602 |
T |
|
| Q |
220 |
caattaattcatcaatacagtgtcgataagcacttctaa |
258 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
14680603 |
caattaattcatcaatacagtgtcggtgagcacgtctaa |
14680641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 408
Target Start/End: Original strand, 14680684 - 14680793
Alignment:
| Q |
302 |
aactgaaaacagcaattcctttatttttatttttctaataccattggtgta---tgtatatagttacataggtttctagttttatggaatggaggtgaaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||| |||||||| ||||||| || || |
|
|
| T |
14680684 |
aactgaaaacagcaattcctttatttttatttttttaataccatcggtgtatgttgtatatatttacataggtttttagttttacagaatggaaatgcaa |
14680783 |
T |
|
| Q |
399 |
gttgttggtt |
408 |
Q |
| |
|
|||||||||| |
|
|
| T |
14680784 |
gttgttggtt |
14680793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 26092330 - 26092371
Alignment:
| Q |
281 |
acagtgtcgatattcacttttaactgaaaacagcaattccttt |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
26092330 |
acagtgtcgatattcacttctaactgaaaa-agcaattccttt |
26092371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University