View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_19 (Length: 416)
Name: NF21660_low_19
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 10201315 - 10201719
Alignment:
| Q |
12 |
agcatagggggaagagaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcct |
111 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201315 |
agcaaagggggaagagaaaatgttttcaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcct |
10201414 |
T |
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| Q |
112 |
cgacaagtatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaaga |
211 |
Q |
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| T |
10201415 |
cgacaagtatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaaga |
10201514 |
T |
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| Q |
212 |
aaatcaagtcaaacttgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgc |
311 |
Q |
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| T |
10201515 |
aaatcaagtcaaacttgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgc |
10201614 |
T |
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| Q |
312 |
cctagataccttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaa |
411 |
Q |
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| T |
10201615 |
cctagataccttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaa |
10201714 |
T |
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| Q |
412 |
aatct |
416 |
Q |
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| T |
10201715 |
aatct |
10201719 |
T |
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Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 51740527 - 51740897
Alignment:
| Q |
19 |
ggggaagagaaaatgtttacaaacaaccatacaacaattgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaag |
118 |
Q |
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| T |
51740527 |
ggggaagagaaaatgttctcaaataaccatacagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaag |
51740626 |
T |
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| Q |
119 |
tatctgcgatactagccacaatactagcaatacatggctctaaaacatcaccttctaccacttatttaatgcacttaatagagcttgtgaagaaaatcaa |
218 |
Q |
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| T |
51740627 |
tatcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaa |
51740726 |
T |
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| Q |
219 |
gtcaaacttgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagat |
318 |
Q |
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| T |
51740727 |
atccaatttattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatga---ttatggtggcaatgacgtcgttgaaattaataattcattagat |
51740823 |
T |
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| Q |
319 |
accttcactgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaaga |
392 |
Q |
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| T |
51740824 |
gcattcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaaga |
51740897 |
T |
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