View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_low_2 (Length: 655)

Name: NF21660_low_2
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_low_2
NF21660_low_2
[»] chr5 (28 HSPs)
chr5 (99-640)||(41987723-41988260)
chr5 (519-634)||(9034992-9035107)
chr5 (526-635)||(31645791-31645900)
chr5 (496-613)||(34893981-34894098)
chr5 (547-635)||(41554469-41554558)
chr5 (519-635)||(6887221-6887337)
chr5 (515-635)||(15710491-15710613)
chr5 (549-635)||(28618589-28618675)
chr5 (551-635)||(29310392-29310476)
chr5 (18-88)||(41987613-41987679)
chr5 (547-635)||(2415383-2415471)
chr5 (547-635)||(6647956-6648044)
chr5 (498-632)||(41357972-41358107)
chr5 (549-635)||(19646084-19646170)
chr5 (550-635)||(33486612-33486698)
chr5 (549-635)||(4070540-4070625)
chr5 (553-635)||(4726971-4727053)
chr5 (519-635)||(41063439-41063553)
chr5 (584-635)||(5378322-5378373)
chr5 (553-634)||(34873849-34873931)
chr5 (549-635)||(37424978-37425067)
chr5 (573-635)||(29154264-29154325)
chr5 (560-635)||(18472767-18472843)
chr5 (583-635)||(28500736-28500788)
chr5 (549-635)||(40565198-40565284)
chr5 (594-635)||(32390690-32390731)
chr5 (591-635)||(6074779-6074823)
chr5 (599-635)||(13079173-13079209)
[»] chr3 (37 HSPs)
chr3 (99-640)||(1220253-1220790)
chr3 (526-635)||(1165439-1165548)
chr3 (526-635)||(20201101-20201210)
chr3 (526-635)||(20203283-20203392)
chr3 (526-635)||(43029645-43029754)
chr3 (526-635)||(50519752-50519861)
chr3 (526-635)||(41882451-41882560)
chr3 (496-635)||(21803462-21803601)
chr3 (521-620)||(35501817-35501915)
chr3 (526-632)||(22286795-22286901)
chr3 (549-635)||(25374113-25374199)
chr3 (18-88)||(1220834-1220900)
chr3 (545-614)||(4019583-4019651)
chr3 (552-620)||(45664217-45664285)
chr3 (549-629)||(40462044-40462124)
chr3 (549-632)||(1806506-1806589)
chr3 (549-635)||(20251636-20251723)
chr3 (547-614)||(53426787-53426854)
chr3 (582-635)||(14741368-14741421)
chr3 (582-635)||(29182651-29182704)
chr3 (550-635)||(43839561-43839644)
chr3 (559-635)||(33076307-33076383)
chr3 (501-604)||(22843988-22844091)
chr3 (549-635)||(42106096-42106183)
chr3 (581-619)||(29776747-29776785)
chr3 (549-635)||(37051609-37051695)
chr3 (547-633)||(43242794-43242880)
chr3 (582-635)||(34766998-34767050)
chr3 (582-635)||(3088705-3088758)
chr3 (547-635)||(50460177-50460263)
chr3 (549-635)||(40797018-40797104)
chr3 (581-635)||(39340216-39340270)
chr3 (549-635)||(913359-913447)
chr3 (551-620)||(11846602-11846671)
chr3 (574-631)||(26412342-26412399)
chr3 (562-635)||(33070152-33070225)
chr3 (583-635)||(47914636-47914687)
[»] chr8 (45 HSPs)
chr8 (520-635)||(9269977-9270092)
chr8 (526-635)||(31874046-31874155)
chr8 (555-635)||(9992656-9992736)
chr8 (549-635)||(16937382-16937468)
chr8 (521-635)||(36545824-36545938)
chr8 (549-632)||(15665524-15665607)
chr8 (549-635)||(37658951-37659037)
chr8 (549-632)||(26937510-26937593)
chr8 (553-635)||(8054851-8054933)
chr8 (526-635)||(13864321-13864430)
chr8 (547-635)||(14530951-14531039)
chr8 (559-635)||(15237680-15237756)
chr8 (544-635)||(16938314-16938406)
chr8 (547-635)||(44295299-44295387)
chr8 (549-635)||(32256764-32256851)
chr8 (549-607)||(10042746-10042804)
chr8 (558-635)||(5989624-5989701)
chr8 (550-635)||(284518-284603)
chr8 (550-635)||(631274-631359)
chr8 (550-635)||(817086-817171)
chr8 (545-632)||(14919438-14919523)
chr8 (550-635)||(27534442-27534527)
chr8 (570-635)||(32412797-32412861)
chr8 (551-635)||(11655953-11656037)
chr8 (498-635)||(12244259-12244398)
chr8 (549-635)||(32061779-32061865)
chr8 (549-635)||(32920637-32920723)
chr8 (567-620)||(17019107-17019160)
chr8 (567-620)||(17549544-17549597)
chr8 (575-635)||(16808889-16808948)
chr8 (520-635)||(23766698-23766811)
chr8 (556-635)||(18190887-18190966)
chr8 (519-578)||(31713135-31713194)
chr8 (549-635)||(14327464-14327550)
chr8 (582-635)||(2628932-2628984)
chr8 (558-635)||(3028070-3028147)
chr8 (549-635)||(3680906-3680994)
chr8 (587-635)||(5327989-5328038)
chr8 (546-615)||(7269527-7269596)
chr8 (582-635)||(16996930-16996982)
chr8 (547-635)||(1215382-1215470)
chr8 (550-629)||(5917790-5917866)
chr8 (557-635)||(6833471-6833551)
chr8 (547-635)||(31147844-31147931)
chr8 (587-635)||(41996568-41996616)
[»] chr4 (41 HSPs)
chr4 (526-635)||(9661815-9661924)
chr4 (526-635)||(16991834-16991943)
chr4 (519-620)||(28588516-28588617)
chr4 (547-631)||(41486558-41486642)
chr4 (526-635)||(4634245-4634354)
chr4 (553-635)||(23067891-23067973)
chr4 (526-635)||(54420755-54420864)
chr4 (549-635)||(3673608-3673694)
chr4 (547-635)||(11817055-11817143)
chr4 (550-635)||(4622753-4622839)
chr4 (549-635)||(46728963-46729048)
chr4 (550-635)||(5388501-5388586)
chr4 (547-635)||(14542555-14542643)
chr4 (496-635)||(37869460-37869598)
chr4 (549-635)||(1645984-1646070)
chr4 (549-635)||(3169025-3169111)
chr4 (557-635)||(12519650-12519727)
chr4 (561-635)||(34115695-34115769)
chr4 (553-635)||(52555764-52555846)
chr4 (526-598)||(1657650-1657722)
chr4 (556-615)||(4959638-4959697)
chr4 (525-635)||(6408400-6408511)
chr4 (584-635)||(38434618-38434669)
chr4 (519-635)||(30416664-30416781)
chr4 (547-632)||(46775902-46775986)
chr4 (547-635)||(23926024-23926112)
chr4 (547-635)||(51646076-51646164)
chr4 (571-635)||(53903617-53903681)
chr4 (556-635)||(42972030-42972109)
chr4 (549-635)||(43156761-43156847)
chr4 (582-635)||(9549485-9549538)
chr4 (549-613)||(7242834-7242898)
chr4 (554-614)||(29577149-29577209)
chr4 (559-635)||(35338389-35338465)
chr4 (558-609)||(44375333-44375384)
chr4 (584-635)||(46716937-46716988)
chr4 (520-578)||(33289326-33289384)
chr4 (594-635)||(28990328-28990369)
chr4 (571-620)||(32188989-32189038)
chr4 (498-602)||(38546188-38546290)
chr4 (599-635)||(2945172-2945208)
[»] chr2 (37 HSPs)
chr2 (496-635)||(3602917-3603056)
chr2 (498-632)||(25237372-25237506)
chr2 (526-635)||(3390394-3390503)
chr2 (526-635)||(25771407-25771516)
chr2 (553-635)||(7640399-7640481)
chr2 (549-635)||(37883638-37883724)
chr2 (530-635)||(6089859-6089964)
chr2 (526-635)||(25516456-25516565)
chr2 (526-635)||(27191378-27191487)
chr2 (526-635)||(27841192-27841301)
chr2 (547-635)||(25623088-25623176)
chr2 (519-635)||(27024182-27024298)
chr2 (547-635)||(29812658-29812746)
chr2 (549-635)||(3464944-3465030)
chr2 (498-631)||(41841883-41842017)
chr2 (549-634)||(42105796-42105881)
chr2 (498-635)||(40125323-40125460)
chr2 (549-635)||(10589023-10589110)
chr2 (549-635)||(5930408-5930494)
chr2 (549-635)||(26491288-26491374)
chr2 (526-635)||(41176824-41176934)
chr2 (526-632)||(44167755-44167861)
chr2 (527-635)||(43566840-43566946)
chr2 (576-635)||(19953582-19953641)
chr2 (550-635)||(19581045-19581131)
chr2 (550-635)||(13268560-13268644)
chr2 (547-635)||(9715587-9715676)
chr2 (550-607)||(15674045-15674102)
chr2 (519-635)||(34479911-34480027)
chr2 (550-613)||(16880024-16880087)
chr2 (526-632)||(36507893-36507999)
chr2 (496-574)||(44951435-44951512)
chr2 (550-635)||(2251388-2251473)
chr2 (568-635)||(29734193-29734261)
chr2 (547-635)||(44441369-44441457)
chr2 (519-578)||(4878795-4878854)
chr2 (547-635)||(5071413-5071501)
[»] chr7 (36 HSPs)
chr7 (526-635)||(24470357-24470466)
chr7 (526-635)||(24475305-24475414)
chr7 (530-635)||(40775233-40775338)
chr7 (556-635)||(25855263-25855342)
chr7 (549-635)||(47749719-47749805)
chr7 (550-635)||(28015342-28015428)
chr7 (526-635)||(49166889-49166998)
chr7 (547-633)||(16263370-16263457)
chr7 (550-635)||(8611665-8611750)
chr7 (547-635)||(23732436-23732524)
chr7 (545-635)||(22751420-22751510)
chr7 (549-635)||(29804719-29804805)
chr7 (553-635)||(30992866-30992948)
chr7 (556-635)||(44681454-44681532)
chr7 (557-635)||(13008716-13008793)
chr7 (557-631)||(43807197-43807271)
chr7 (583-635)||(37399645-37399697)
chr7 (545-635)||(33530511-33530599)
chr7 (549-635)||(21329339-21329424)
chr7 (582-635)||(42490720-42490773)
chr7 (555-635)||(7985883-7985963)
chr7 (583-635)||(9933866-9933918)
chr7 (547-615)||(24045295-24045363)
chr7 (556-635)||(47156388-47156465)
chr7 (549-635)||(8319299-8319386)
chr7 (556-635)||(10250524-10250603)
chr7 (547-635)||(14734092-14734181)
chr7 (549-635)||(35141794-35141882)
chr7 (583-635)||(26017701-26017753)
chr7 (576-635)||(39090127-39090187)
chr7 (551-607)||(43483581-43483637)
chr7 (554-635)||(38649400-38649482)
chr7 (583-635)||(15124023-15124076)
chr7 (520-619)||(23177640-23177740)
chr7 (558-635)||(41748542-41748621)
chr7 (547-619)||(46918385-46918456)
[»] chr1 (35 HSPs)
chr1 (526-635)||(6212929-6213038)
chr1 (526-635)||(22344955-22345064)
chr1 (496-635)||(14717286-14717424)
chr1 (553-635)||(21326462-21326544)
chr1 (551-635)||(5832220-5832304)
chr1 (556-635)||(44562792-44562871)
chr1 (501-635)||(38646521-38646655)
chr1 (547-635)||(17579751-17579839)
chr1 (554-635)||(630828-630909)
chr1 (549-635)||(46589161-46589245)
chr1 (547-612)||(52839504-52839569)
chr1 (571-635)||(8893300-8893364)
chr1 (547-632)||(52752015-52752096)
chr1 (549-635)||(35077933-35078019)
chr1 (550-635)||(44514032-44514118)
chr1 (550-607)||(52839409-52839466)
chr1 (555-635)||(13691801-13691881)
chr1 (572-632)||(23320448-23320508)
chr1 (582-635)||(40992352-40992407)
chr1 (563-635)||(45659041-45659113)
chr1 (549-635)||(10877330-10877417)
chr1 (582-635)||(4564536-4564589)
chr1 (582-635)||(15276493-15276546)
chr1 (584-635)||(23257108-23257159)
chr1 (494-589)||(27469821-27469916)
chr1 (549-635)||(12148091-12148177)
chr1 (594-635)||(15698230-15698271)
chr1 (549-633)||(22032135-22032219)
chr1 (594-635)||(29067080-29067121)
chr1 (549-634)||(48655110-48655195)
chr1 (569-630)||(49651840-49651901)
chr1 (496-619)||(30853841-30853965)
chr1 (584-635)||(1767986-1768037)
chr1 (553-635)||(33177640-33177721)
chr1 (584-630)||(40488445-40488491)
[»] chr6 (22 HSPs)
chr6 (553-635)||(19759777-19759859)
chr6 (526-635)||(16913290-16913399)
chr6 (549-635)||(7049232-7049317)
chr6 (569-635)||(20845013-20845079)
chr6 (550-635)||(12576521-12576606)
chr6 (550-634)||(32457632-32457716)
chr6 (549-635)||(4663863-4663949)
chr6 (559-635)||(15128192-15128267)
chr6 (552-631)||(548912-548991)
chr6 (581-635)||(1944113-1944167)
chr6 (551-635)||(32804281-32804366)
chr6 (552-635)||(13234151-13234233)
chr6 (547-633)||(8644228-8644314)
chr6 (557-615)||(33194598-33194656)
chr6 (591-635)||(23843467-23843511)
chr6 (527-635)||(891551-891659)
chr6 (549-632)||(31747945-31748026)
chr6 (524-607)||(10744539-10744622)
chr6 (497-592)||(27575113-27575208)
chr6 (584-635)||(33541572-33541623)
chr6 (550-632)||(903441-903525)
chr6 (571-619)||(22530287-22530335)
[»] scaffold0045 (1 HSPs)
scaffold0045 (526-635)||(9691-9800)
[»] scaffold0011 (1 HSPs)
scaffold0011 (549-635)||(11004-11090)
[»] scaffold0157 (1 HSPs)
scaffold0157 (557-635)||(1184-1261)
[»] scaffold0340 (1 HSPs)
scaffold0340 (559-635)||(11820-11896)
[»] scaffold1294 (1 HSPs)
scaffold1294 (518-633)||(734-849)
[»] scaffold0722 (1 HSPs)
scaffold0722 (561-635)||(5569-5643)
[»] scaffold0316 (1 HSPs)
scaffold0316 (563-635)||(12246-12318)
[»] scaffold0012 (1 HSPs)
scaffold0012 (550-635)||(244620-244707)
[»] scaffold0150 (1 HSPs)
scaffold0150 (567-620)||(10383-10436)
[»] scaffold0024 (1 HSPs)
scaffold0024 (583-635)||(36548-36600)
[»] scaffold0009 (1 HSPs)
scaffold0009 (549-635)||(105037-105123)


Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 99 - 640
Target Start/End: Original strand, 41987723 - 41988260
Alignment:
Q  99 cacttttatttgtgatggccaaatctgtttgtaatagtcataatattaattgcatttgcttgggtcagtgtcaacgaaatcaaagattttcaagttggtc 198  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41987723 cacttttatttgtgagggccaaatctgtttgtaatagtcgtaatactaattgcatttgcttgggtcagtgtcaacgaaatcaaagattttcaagttggtc 41987822  T
Q  199 ttttgatgagtatcatttttaacaggtgccaccaaccccttattgttgacccataattcatattcctatcttattgaatagtacaagctttagccattcg 298  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41987823 ctttgatgagtatcatttttaacaggtgccaccaaccccctattgttgacccataattcatattcctatcttattgaatagtacaagctttagccattcg 41987922  T
Q  299 tggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaa 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41987923 tggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaa 41988022  T
Q  399 tcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacataatgataaaccatactagtctctcttcccttctt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    |    
T  41988023 tcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacctaatgataaaccatactagtctctcttccc----t 41988118  T
Q  499 tctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaa 598  Q
    ||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41988119 tctttcttgtgaaccatcgccaaaactctagtttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcgcccctctaa 41988218  T
Q  599 ctcgtttttctctttcccttttgttaaaataagtgatattgt 640  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  41988219 ctcgtttttctctttcccttttgttgaaataagtgattttgt 41988260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 519 - 634
Target Start/End: Complemental strand, 9035107 - 9034992
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    |||||| ||||||||||||||| |  ||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||    
T  9035107 caaaatcctagtttcttctccttcatctatcaatgaggggtgatttatgatcaatttttgactcaaaatcatccctctaactcgtttttctctttccatt 9035008  T
Q  619 ttgttaaaataagtga 634  Q
    || |||||||||||||    
T  9035007 ttattaaaataagtga 9034992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 31645791 - 31645900
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | || |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||  |||||||||| || |    
T  31645791 ctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgtttttccttttcccttttattga 31645890  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  31645891 aataagtgat 31645900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 496 - 613
Target Start/End: Complemental strand, 34894098 - 34893981
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctc 595  Q
    |||||| |||||||| ||| | ||||||  ||||||||||||||| |  | ||||||||||||||||||| | |||||||||||  ||||||||||||||    
T  34894098 ctttctctcttgtgagccaacatcaaaaccctagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctc 34893999  T
Q  596 taactcgtttttctcttt 613  Q
    ||||||||||||||||||    
T  34893998 taactcgtttttctcttt 34893981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 41554469 - 41554558
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||| || |||||||||||    
T  41554469 atcaaagaggggtgatttaggatcaatttttgatccaaaatcacccctctaacttgttttttctatttcccttttattgaaataagtgat 41554558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 519 - 635
Target Start/End: Complemental strand, 6887337 - 6887221
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    ||||| |||||||||||||||| |  | ||||||||||||||||||||| ||||||||| |  ||||||||||||||||||| |||||||  ||||||||    
T  6887337 caaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctctaacttgtttttccttttccctt 6887238  T
Q  619 ttgttaaaataagtgat 635  Q
    || || |||||||||||    
T  6887237 ttattgaaataagtgat 6887221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 515 - 635
Target Start/End: Original strand, 15710491 - 15710613
Alignment:
Q  515 tcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttg--attcaaaatcacccctctaactcgtttttctctt 612  Q
    ||||||||| ||||||||||| |||| |  | |||||||| |||||||||| | |||||||||   || |||||||||||||||||||||||||||||||    
T  15710491 tcgtcaaaactctagtttcttttccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcacccctctaactcgtttttctctt 15710590  T
Q  613 tcccttttgttaaaataagtgat 635  Q
    |||||||| || |||||||||||    
T  15710591 tcccttttattgaaataagtgat 15710613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 28618589 - 28618675
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| | ||||||||| |  |||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  28618589 caaagaggggtgatttaaggtcaatttttaacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 28618675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 551 - 635
Target Start/End: Complemental strand, 29310476 - 29310392
Alignment:
Q  551 aagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||   |||||||||| || |||||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgttttttcttttcccttttattgaaataagtgat 29310392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 41987613 - 41987679
Alignment:
Q  18 aatcacattccctattagctaaattaagcatgaacacaagtatttgcttcacgatataagtgacaaatttt 88  Q
    |||||||||||||||||||||||    ||||||||| ||||||||||||||||||||||||||||||||||    
T  41987613 aatcacattccctattagctaaa----gcatgaacataagtatttgcttcacgatataagtgacaaatttt 41987679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 2415383 - 2415471
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||  ||||||||||| |||||||||||  ||||||||||| ||||||| |||||||| |||||||||| || |||||||||||    
T  2415383 atcaaagataggtgatttagggtcaatttttgacccaaaatcacccttctaacttgtttttctttttcccttttattgaaataagtgat 2415471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 6648044 - 6647956
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||| | |||| ||||||  ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||    
T  6648044 atcaaagaggggcgatttatggtcaaattttgacccaaaatcactcctctaactcgtttttcgctttcccttttattgaaataagtgat 6647956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 632
Target Start/End: Original strand, 41357972 - 41358107
Alignment:
Q  498 ttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccc-tct 596  Q
    |||| |||||||| ||| |  ||||| ||||||||||| |||| |    ||||||||  ||||||||||| |||||||||||  |||||||||||| |||    
T  41357972 ttctctcttgtgagccaccaccaaaactctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaatcaccccctct 41358071  T
Q  597 aactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||||||||||||| |||||| || ||||||||    
T  41358072 aactcgtttttctcttttccttttattgaaataagt 41358107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 19646170 - 19646084
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||| | ||||| |||||  |||||||||||||||||||| ||||||||||||||||||  | |||||||||||    
T  19646170 caaagaggggtggtttaaggtcaatgtttgacccaaaatcacccctctaactcatttttctctttcccttttaatgaaataagtgat 19646084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 33486698 - 33486612
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| |||||||||||  ||||||||||| ||||||| | ||||||| |||||||||| || |||||||||||    
T  33486698 aaagaggggtgatttagggtcaatttttgacccaaaatcacccatctaacttgttttttctatttcccttttattgaaataagtgat 33486612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 4070540 - 4070625
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||| |||||||||||||| ||| |||||||  ||||||||||||||| |||||||||||| ||||| |||| || |||||||||||    
T  4070540 caaaaaggggtgatttagggtca-tttttgacccaaaatcacccctctgactcgtttttctatttcctttttattgaaataagtgat 4070625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 4727053 - 4726971
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||| |||||||||||  |||||||| || | |||||||||||||| |||||||||| || |||||||||||    
T  4727053 gaggggtaatttagggtcaatttttgacccaaaatcatccatataactcgtttttctatttcccttttattgaaataagtgat 4726971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 519 - 635
Target Start/End: Complemental strand, 41063553 - 41063439
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    |||||| ||| ||||||||||| |  | ||||||||||| ||||  ||| ||||||||||| |||||||||| | |||||||||||||||||||||| ||    
T  41063553 caaaatcctaatttcttctccttcatccatcaaagaggg-tgatc-agggtcaatttttgactcaaaatcactcatctaactcgtttttctctttccatt 41063456  T
Q  619 ttgttaaaataagtgat 635  Q
    || || |||||| ||||    
T  41063455 ttattgaaataaatgat 41063439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 5378322 - 5378373
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  5378322 aaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 5378373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 634
Target Start/End: Original strand, 34873849 - 34873931
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattc-aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtga 634  Q
    ||||||||||||||| |||||||||   || |||||||||| |||||||||||||||  |||||||||| || ||||||||||    
T  34873849 gaggggtgatttagggtcaatttttttatcgaaaatcacccttctaactcgtttttcagtttcccttttattgaaataagtga 34873931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 37424978 - 37425067
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttt---tctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| | ||||||| |||  ||||||||| |||||||||||||||   | | |||||||||| || |||||||||||    
T  37424978 caaagaggggtgatttatggtcaatttctgacccaaaatcacgcctctaactcgttttatatatatttcccttttattgaaataagtgat 37425067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 573 - 635
Target Start/End: Original strand, 29154264 - 29154325
Alignment:
Q  573 tttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| |||||||||||||||||||| |||||| |||||| ||||| || |||||||||||    
T  29154264 tttttgactcaaaatcacccctctaacttgttttt-tctttctcttttattgaaataagtgat 29154325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 635
Target Start/End: Complemental strand, 18472843 - 18472767
Alignment:
Q  560 gatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| |||||||||||  ||||||||||||||||||| | ||||||| ||| |||||| ||  ||||||||||    
T  18472843 gatttagggtcaatttttgacccaaaatcacccctctaacttgttttttctattttccttttattgcaataagtgat 18472767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 28500736 - 28500788
Alignment:
Q  583 aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| ||| |||||| |||||||||||||||||| || |||||||||||    
T  28500736 aaaatcactcctttaactcttttttctctttcccttttattgaaataagtgat 28500788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 40565284 - 40565198
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||| |  ||||||||  | |||||||| |||||| ||||||||||| |||| || | || |||||||||||    
T  40565284 caaagaggggtggtttagggttgatttttgaccccaaatcacctctctaaatcgtttttctccttcctttctatttaaataagtgat 40565198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 635
Target Start/End: Complemental strand, 32390731 - 32390690
Alignment:
Q  594 tctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  32390731 tctaactcgtttttctctttcctttttattgaaataagtgat 32390690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 6074823 - 6074779
Alignment:
Q  591 ccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| ||||||||||| ||||||||| || |||||||||||    
T  6074823 ccctctaaatcgtttttctccttcccttttatttaaataagtgat 6074779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 599 - 635
Target Start/End: Original strand, 13079173 - 13079209
Alignment:
Q  599 ctcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||| || |||||||||||    
T  13079173 ctcgtttttctctttcccttttattgaaataagtgat 13079209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 99 - 640
Target Start/End: Complemental strand, 1220790 - 1220253
Alignment:
Q  99 cacttttatttgtgatggccaaatctgtttgtaatagtcataatattaattgcatttgcttgggtcagtgtcaacgaaatcaaagattttcaagttggtc 198  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1220790 cacttttatttgtgatggccaaatttgtttgtaatagtcgtaatactaattgcatttgcttgggtcagtgtcaacgaaatcaaagattttcaagttggtc 1220691  T
Q  199 ttttgatgagtatcatttttaacaggtgccaccaaccccttattgttgacccataattcatattcctatcttattgaatagtacaagctttagccattcg 298  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1220690 ctttgatgagtatcatttttaacaggtgccaccaaccccttattgttgacccataattcatattcctatcttattgaatagtacaagctttagccattcg 1220591  T
Q  299 tggcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaa 398  Q
    ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1220590 tggcaagaatagctacaaagtacaacacatatgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaa 1220491  T
Q  399 tcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacataatgataaaccatactagtctctcttcccttctt 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  1220490 tcatgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcatcgaatgataaaccatactagtctctcttcccttctt 1220391  T
Q  499 tctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaa 598  Q
        ||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1220390 ----tcttgtgaaccatcgtcaaaactctaatttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaa 1220295  T
Q  599 ctcgtttttctctttcccttttgttaaaataagtgatattgt 640  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  1220294 ctcgtttttctctttcccttttgttgaaataagtgattttgt 1220253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 1165548 - 1165439
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| |||||||| |||||||||| || |    
T  1165548 ctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttctttttcccttttattga 1165449  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  1165448 aataagtgat 1165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 20201210 - 20201101
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |    
T  20201210 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcacttttattga 20201111  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  20201110 aataagtgat 20201101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 20203392 - 20203283
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |    
T  20203392 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcacttttattga 20203293  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  20203292 aataagtgat 20203283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 43029645 - 43029754
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||  |||||||||| || |    
T  43029645 ctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctctaacttgtttttccttttcccttttattga 43029744  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  43029745 aataagtgat 43029754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 50519752 - 50519861
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | |||||| |||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| || |    
T  50519752 ctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattga 50519851  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  50519852 aataagtgat 50519861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 41882560 - 41882451
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | |||||||||| |||||||||| |||||||||||  |||||| ||||||||||||||||||||| |||||||| | || |    
T  41882560 ctagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctctaactcgtttttctatttcccttgtattga 41882461  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  41882460 aataagtgat 41882451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 496 - 635
Target Start/End: Original strand, 21803462 - 21803601
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctc 595  Q
    |||||| |||||||| || ||  |||||  ||||||||||||||| |  ||| |||||||| |||||| ||  |||||||||||  ||||||||||||||    
T  21803462 ctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttttgacccaaaatcacccctc 21803561  T
Q  596 taactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| ||||| || ||| |||||||    
T  21803562 taactcgtttttctctttctcttttattgaaacaagtgat 21803601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 521 - 620
Target Start/End: Complemental strand, 35501915 - 35501817
Alignment:
Q  521 aaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||| ||||||||||||||| |  | | ||||||||| ||||||||| | |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35501915 aaatcctagtttcttctccttcatccaccaaagaggg-tgatttagggttaatttttgacccaaaatcacccctctaactcgtttttctctttccctttt 35501817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 526 - 632
Target Start/End: Complemental strand, 22286901 - 22286795
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||||||||||||| |||||||||||   ||||| ||||||||||||||||||||| ||| |||||| || |    
T  22286901 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattacccctctaactcgtttttctattttccttttattga 22286802  T
Q  626 aataagt 632  Q
    |||||||    
T  22286801 aataagt 22286795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 25374199 - 25374113
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| |||||||||||| | |||||||||   ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  25374199 caaagaagggtgatttagggttaatttttgacctaaaatcacccctctaactcgtttttctcttttccttttcttgaaataagtgat 25374113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 1220900 - 1220834
Alignment:
Q  18 aatcacattccctattagctaaattaagcatgaacacaagtatttgcttcacgatataagtgacaaatttt 88  Q
    |||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||||||||||    
T  1220900 aatcacattccctattagctaaa----gcatgaacacaagtatttgcttcaccatataagtgacaaatttt 1220834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 545 - 614
Target Start/End: Original strand, 4019583 - 4019651
Alignment:
Q  545 ctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttc 614  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||    
T  4019583 ctatcaaagaggggtgatttagggtcaatttt-gactcaaaatcacctctctaactcgtttttctctttc 4019651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 552 - 620
Target Start/End: Original strand, 45664217 - 45664285
Alignment:
Q  552 agaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||| |||||    
T  45664217 agaggggtgatttaggatcaaattttgacccaaaatcacccctctaactcgtttttctatttctctttt 45664285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 629
Target Start/End: Complemental strand, 40462124 - 40462044
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaata 629  Q
    ||||||| ||||||||||  |||| ||||||  ||||||||||||||||||| ||||||||||||||||||| || |||||    
T  40462124 caaagagtggtgatttagagtcaaattttgacccaaaatcacccctctaacttgtttttctctttcccttttattgaaata 40462044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 632
Target Start/End: Complemental strand, 1806589 - 1806506
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    |||||||||||| |||||| |||||||||||| | ||||||||||||||| ||||||||||| |||| || | || ||||||||    
T  1806589 caaagaggggtggtttagggtcaatttttgatcccaaatcacccctctaaatcgtttttctccttccattctatttaaataagt 1806506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 20251636 - 20251723
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttg-attcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| || ||||||  |  ||||||||||| ||||||||||||||||||||||||||  || |||||||||||    
T  20251636 caaagaggggtgatttagggtcgatttttttacccaaaatcacccttctaactcgtttttctctttccctttgattgaaataagtgat 20251723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 614
Target Start/End: Original strand, 53426787 - 53426854
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttc 614  Q
    |||||||| || ||||||||| ||||||||| |  |||||||||||||||||||||||||||||||||    
T  53426787 atcaaagatggatgatttagggtcaattttttacgcaaaatcacccctctaactcgtttttctctttc 53426854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 635
Target Start/End: Complemental strand, 14741421 - 14741368
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  14741421 caaaatcacctctctaactcgtttttctctttcccttttattgaaataagtgat 14741368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 635
Target Start/End: Complemental strand, 29182704 - 29182651
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  29182704 caaaatcatccctctaactcgtttttctctttcccttttattgaaataagtgat 29182651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 43839644 - 43839561
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||||||||| |||||||||||  |||| |||||| ||||||||| ||||||||||||||||| || |||||||||||    
T  43839644 aaagatgggtgatttagggtcaatttttgac-caaagtcaccc-tctaactcgcttttctctttcccttttattgaaataagtgat 43839561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 559 - 635
Target Start/End: Original strand, 33076307 - 33076383
Alignment:
Q  559 tgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| | || ||||||| |||||||||||||||||||| |||| |||||| |||||| || |||||||||||    
T  33076307 tgatttagggttaacttttgatccaaaatcacccctctaactcattttcctcttttccttttattgaaataagtgat 33076383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 501 - 604
Target Start/End: Original strand, 22843988 - 22844091
Alignment:
Q  501 tttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaact 600  Q
    ||||||||||||| ||  |||||  ||||||| ||||||| |    ||||||||||| ||||||| | |||||||||||  |||||||||||||||||||    
T  22843988 tttcttgtgaaccgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcacccctctaact 22844087  T
Q  601 cgtt 604  Q
    ||||    
T  22844088 cgtt 22844091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 42106096 - 42106183
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaa-ctcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||||   |||||||||| ||||| ||  ||||||| |||||||||| || |||||||||||    
T  42106096 caaagaggggtgatttagggtcaatttttgacctaaaatcacccatctaacctgttttttctatttcccttttattgaaataagtgat 42106183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 581 - 619
Target Start/End: Complemental strand, 29776785 - 29776747
Alignment:
Q  581 tcaaaatcacccctctaactcgtttttctctttcccttt 619  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29776785 tcaaaatcacccctctaactcgtttttctctttcccttt 29776747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 37051609 - 37051695
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| ||||||||| |||||||||||  |  |||||||||||||| ||||||||||| ||||||| | || || ||||||||    
T  37051609 caaagagggatgatttagggtcaatttttgaccctgaatcacccctctaaatcgtttttctccttcccttctatttaagtaagtgat 37051695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 633
Target Start/End: Original strand, 43242794 - 43242880
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtg 633  Q
    |||||| | |||||||||||| ||| |||||||  ||||||||||| | |||||||||||||||| ||||||||  | |||||||||    
T  43242794 atcaaataagggtgatttagggtcagtttttgacacaaaatcacccatttaactcgtttttctctgtcccttttactgaaataagtg 43242880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 34766998 - 34767050
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||||||||||||||||||||||||||| || |||||||||||    
T  34766998 caaaatcaccc-tctaactcgtttttctctttcccttttattgaaataagtgat 34767050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 635
Target Start/End: Complemental strand, 3088758 - 3088705
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| |||||||||| ||| |||||| || |||||||||||    
T  3088758 caaaatcacccctctaattcgtttttctattttccttttattgaaataagtgat 3088705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 50460177 - 50460263
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||||||| | |||||||||||   |||||||||| |  | |||||||||||||||| ||||| || |||||||||||    
T  50460177 atcaaagagggatgatttaaggtcaatttttgacataaaatcacccat--acctcgtttttctctttctcttttattgaaataagtgat 50460263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 40797018 - 40797104
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||| |||||||||||||| | |||||| ||  ||||||||||||||||||| | ||||||| |||||||||| || |||||| ||||    
T  40797018 caaaaaggggtgatttagggttaatttt-gagccaaaatcacccctctaacttgttttttctatttcccttttattgaaataaatgat 40797104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 635
Target Start/End: Original strand, 39340216 - 39340270
Alignment:
Q  581 tcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| |||||||||| |||||||||||| | |||| || |||||||||||    
T  39340216 tcaaaatcatccctctaacttgtttttctcttttctttttattgaaataagtgat 39340270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 913447 - 913359
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg--tttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||| |   |||||||||||  ||||||||||||||||||  |  ||||||| |||||||||| || |||||||||||    
T  913447 caaagaggggtaattcatagtcaatttttgacccaaaatcacccctctaacatgtttttttctatttccctttttttgaaataagtgat 913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 620
Target Start/End: Original strand, 11846602 - 11846671
Alignment:
Q  551 aagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||||| ||||| |||| | |||||||||   |||||||||| ||||||| |||||||||||||| ||||    
T  11846602 aagaggagtgatatagggttaatttttgagcgaaaatcacccgtctaacttgtttttctctttccatttt 11846671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 631
Target Start/End: Original strand, 26412342 - 26412399
Alignment:
Q  574 ttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataag 631  Q
    |||||| ||||||||||  |||||| |||||||||||| |||||||| || |||||||    
T  26412342 ttttgactcaaaatcacatctctaagtcgtttttctctctcccttttattgaaataag 26412399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 635
Target Start/End: Original strand, 33070152 - 33070225
Alignment:
Q  562 tttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| ||||||||| |  | ||||||||||||||| ||||||||||| |||| |||| || |||||| ||||    
T  33070152 tttagggtcaatttttaaccccaaatcacccctctaaatcgtttttctcattcctttttatttaaataaatgat 33070225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 47914687 - 47914636
Alignment:
Q  583 aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||||||| ||||||| |||| || ||| |||||||    
T  47914687 aaaatcacccctctaactcgttttt-tctttccattttattgaaaaaagtgat 47914636  T

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Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 520 - 635
Target Start/End: Original strand, 9269977 - 9270092
Alignment:
Q  520 aaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttt 619  Q
    |||| |||||||||||||||| |  | | ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9269977 aaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccctctaactcgtttttctctttcccttt 9270076  T
Q  620 tgttaaaataagtgat 635  Q
    | || |||||||||||    
T  9270077 tattgaaataagtgat 9270092  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 31874046 - 31874155
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||  |||||||||| || |    
T  31874046 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttccttttcccttttattga 31874145  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  31874146 aataagtgat 31874155  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 555 - 635
Target Start/End: Original strand, 9992656 - 9992736
Alignment:
Q  555 ggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  9992656 ggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcccttttattgaaataagtgat 9992736  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 16937468 - 16937382
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||||| ||||||||||  | |||||||||||    
T  16937468 caaagaggggtgatttagggtcaatttttgatccaaaatcatccctctaacttgtttttctatttcccttttacttaaataagtgat 16937382  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 521 - 635
Target Start/End: Complemental strand, 36545938 - 36545824
Alignment:
Q  521 aaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||| ||||||||||||||| |  | | ||||||||| ||||||| | ||||||| |||  ||| |||||||||||||||||||||||||||||||||||    
T  36545938 aaatcctagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcacccctctaactcgtttttctctttccctttt 36545839  T
Q  621 gttaaaataagtgat 635  Q
     || |||||||||||    
T  36545838 attgaaataagtgat 36545824  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 549 - 632
Target Start/End: Original strand, 15665524 - 15665607
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||||||||||||||| |||| ||||||  ||||||||||||||||||| ||||||||||||| ||||| || ||||||||    
T  15665524 caaagaggggtgatttagggtcaacttttgacacaaaatcacccctctaacttgtttttctctttcacttttattgaaataagt 15665607  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 37658951 - 37659037
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||| | |||||| | |||||||||| || |||||||||||    
T  37658951 caaagaggggtgatttagggtcaatttttgacacaaaatcacccctctaatttgtttttatatttcccttttattgaaataagtgat 37659037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 549 - 632
Target Start/End: Original strand, 26937510 - 26937593
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||||||| ||||||| | || |||||| |||||||||||||||||||||||||| || |||||||||| || ||||||||    
T  26937510 caaagaggggttatttagggttaagttttgactcaaaatcacccctctaactcgttttcctttttcccttttattgaaataagt 26937593  T

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Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 8054933 - 8054851
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| |||||||||||  |||||| | ||||||||||||||||||| |||||||| | || |||||||||||    
T  8054933 gaggggtgatttagggtcaatttttgacccaaaattatccctctaactcgtttttctatttcccttatattgaaataagtgat 8054851  T

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Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 13864321 - 13864430
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |   |||||||||||||||||||| | |||| ||||||  ||||||||||  | |||||||||||| | |||||||||| || |    
T  13864321 ctagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacctatgtaactcgtttttttatttcccttttattga 13864420  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  13864421 aataagtgat 13864430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 14531039 - 14530951
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||| |||||| ||||||||||| || ||||||||| ||||| ||||||||||| ||| ||| | || |||||||||||    
T  14531039 atcaaagaggggtggtttagggtcaatttttgactccaaatcacccttctaaatcgtttttctccttctcttctatttaaataagtgat 14530951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 559 - 635
Target Start/End: Complemental strand, 15237756 - 15237680
Alignment:
Q  559 tgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| ||||||||| | || ||||||||| ||||||||||||||||||||||||||| || || ||||||||    
T  15237756 tgatttagggtcaatttttaactctaaatcacccatctaactcgtttttctctttcccttttattgaagtaagtgat 15237680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 544 - 635
Target Start/End: Complemental strand, 16938406 - 16938314
Alignment:
Q  544 cctatcaaagaggggtgatttaggatcaatttttgattca-aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||| |||||||||    || ||||||  ||| ||||| |||||||||||||||||||||| |||||||||||    
T  16938406 cctatcaaagaggggtgatttagggtcaatttttttaccataaatcattcctttaacttgtttttctctttcccttttgttgaaataagtgat 16938314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 44295299 - 44295387
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||| |||||||||||  |||||||| | |||||||| |||||||  ||||| |||| || |||||||||||    
T  44295299 atcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttttccttttcctttttattgaaataagtgat 44295387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 32256851 - 32256764
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttg-attcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||  |  ||||||||||||||||||| |||||| | |||||||||| || |||||||||||    
T  32256851 caaagaggggtgatttagggtcaatttttttacccaaaatcacccctctaacttgtttttttatttcccttttattgaaataagtgat 32256764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 607
Target Start/End: Original strand, 10042746 - 10042804
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt 607  Q
    ||||||||||||||||| | |||||||||||  ||||||||||||||||||||||||||    
T  10042746 caaagaggggtgatttatggtcaatttttgacccaaaatcacccctctaactcgttttt 10042804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 635
Target Start/End: Original strand, 5989624 - 5989701
Alignment:
Q  558 gtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||| ||||||||| |  |||||||||  ||||||||||||||||||||||||||||  | |||||||||||    
T  5989624 gtgatttagggtcaatttttaacccaaaatcacatctctaactcgtttttctctttccctttttatgaaataagtgat 5989701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 284603 - 284518
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| ||||||||| |||||||||||||  |||||| ||| || ||||||||||||||| ||  |||||||| ||||| |||||    
T  284603 aaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcgtttttctcattttcttttgttgaaatatgtgat 284518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 631274 - 631359
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| ||||||||| |||||||||||||  |||||| ||| || ||||||||||||||| ||  |||||||| ||||| |||||    
T  631274 aaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcgtttttctcattttcttttgttgaaatatgtgat 631359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 817086 - 817171
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| ||||||||| |||||||||||||  |||||| ||| || ||||||||||||||| ||  |||||||| ||||| |||||    
T  817086 aaagagaggtgatttatgatcaatttttgacccaaaattaccgctttaactcgtttttctcattttcttttgttgaaatatgtgat 817171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 632
Target Start/End: Complemental strand, 14919523 - 14919438
Alignment:
Q  545 ctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccct-ctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    |||||||||||| |||||||||| | |||||  ||| ||||||||| ||| | ||||||||||| ||||||||||||||||||||||||    
T  14919523 ctatcaaagaggagtgatttagggttaattt--gatccaaaatcactccttcaaactcgttttt-tctttcccttttgttaaaataagt 14919438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 27534527 - 27534442
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| |||||||||||| | |||||  |||||||  | ||||||||| |||| |||| || |||||||||||    
T  27534527 aaagaggggtgatttagggtcaatttttgatcccaaatcgtccctctacattgtttttctccttcctttttatttaaataagtgat 27534442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 570 - 635
Target Start/End: Original strand, 32412797 - 32412861
Alignment:
Q  570 caatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||    
T  32412797 caatttttgatccaaaatcacccctctcactcg-ttttccctttcccttttattgaaataagtgat 32412861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 635
Target Start/End: Complemental strand, 11656037 - 11655953
Alignment:
Q  551 aagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||| ||||||||||||||||||||||||  | ||||||| | || |||||||||||||| |||| |||| |  |||||||||||    
T  11656037 aagatgggtgatttaggatcaatttttgacccgaaatcactcttccaactcgtttttctcgttcctttttatcgaaataagtgat 11655953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 498 - 635
Target Start/End: Complemental strand, 12244398 - 12244259
Alignment:
Q  498 ttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaa-tttttgattcaaaatcacccctct 596  Q
    |||| |||||||| || || |||||||  |||||||||||||| |  |||| || || ||||||||| || |||| ||||| || ||||||||| ||| |    
T  12244398 ttctctcttgtgagccgtcatcaaaatcttagtttcttctccttcatctattaatgaagggtgattttgggtcaatttttttatccaaaatcactccttt 12244299  T
Q  597 aactcgtttttctc-tttcccttttgttaaaataagtgat 635  Q
    ||||||||||  || ||||||||||||| | |||||||||    
T  12244298 aactcgttttcatcttttcccttttgttgatataagtgat 12244259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 32061779 - 32061865
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||  |||||| |||||||||||  | ||||||||| ||||| |||||| |||| ||||| ||| || |||||||||||    
T  32061779 caaagaggggtagtttagggtcaatttttgaccccaaatcacccttctaaatcgtttctctccttcccctttatttaaataagtgat 32061865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 32920637 - 32920723
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||| ||||| ||||   | |||||||| |||||| ||||||||||| |||| |||| || |||||||||||    
T  32920637 caaagaggggtggtttagggtcaatctttgcccctaaatcaccgctctaaatcgtttttctccttcctttttatttaaataagtgat 32920723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 620
Target Start/End: Original strand, 17019107 - 17019160
Alignment:
Q  567 gatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||||||||||||  ||||||||||| ||||| | |||||||||||||||||||    
T  17019107 gatcaatttttgacccaaaatcacccttctaaattgtttttctctttccctttt 17019160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 620
Target Start/End: Original strand, 17549544 - 17549597
Alignment:
Q  567 gatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||||||||||||  ||||||||||| ||||| | |||||||||||||||||||    
T  17549544 gatcaatttttgacccaaaatcacccttctaaattgtttttctctttccctttt 17549597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 635
Target Start/End: Original strand, 16808889 - 16808948
Alignment:
Q  575 tttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| ||||||||||| |||||||| ||||||||||| |||||| || |||||||||||    
T  16808889 tttgatccaaaatcacccatctaactcatttttctcttt-ccttttattgaaataagtgat 16808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 635
Target Start/End: Original strand, 23766698 - 23766811
Alignment:
Q  520 aaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttt 619  Q
    |||| ||||||||||||| || |  | | |||||||  |||||||| | |||||||||||  ||||||||||| |  ||||||||||||| ||| | |||    
T  23766698 aaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcacccat--aactcgtttttctattttcattt 23766795  T
Q  620 tgttaaaataagtgat 635  Q
    | ||||||||||||||    
T  23766796 tattaaaataagtgat 23766811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 18190966 - 18190887
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||| ||||||||||| || ||||||||  ||||| |||||||| || ||||||| | || |||||||||||    
T  18190966 gggtggtttagggtcaatttttgactccaaatcaccaatctaaatcgtttttatccttcccttctatttaaataagtgat 18190887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 578
Target Start/End: Complemental strand, 31713194 - 31713135
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttg 578  Q
    ||||| |||||||||||| ||| | || ||||||||||||||||||||| |||| |||||    
T  31713194 caaaactctagtttcttcaccttcacccatcaaagaggggtgatttagggtcaacttttg 31713135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 14327464 - 14327550
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||| |||||||||||  | || ||||||||| |  ||||||||||  |||| |||| || |||||||||||    
T  14327464 caaagaggggtggtttagggtcaatttttgaccccaattcacccctccatatcgtttttcttcttccattttatttaaataagtgat 14327550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 2628932 - 2628984
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||||||||| |||||| |||||||||| || |||||||||||    
T  2628932 caaaatcacccatctaactcg-ttttctatttcccttttattgaaataagtgat 2628984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 635
Target Start/End: Original strand, 3028070 - 3028147
Alignment:
Q  558 gtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| | |||||||||||| |||||||||||  ||| | || ||||||||||||  ||||| || |||||||||||    
T  3028070 gtgattcatgatcaatttttgtttcaaaatcacttctcgagcttgtttttctctttatcttttattgaaataagtgat 3028147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 3680906 - 3680994
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttg--attcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||  |||||||||   |  |||||||||  |||||||| |||||||||||| |||||| || |||||| ||||    
T  3680906 caaagaggggtgatttagagtcaatttttttcacccaaaatcacttctctaacttgtttttctcttttccttttattgaaataaatgat 3680994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 635
Target Start/End: Original strand, 5327989 - 5328038
Alignment:
Q  587 tcacccctctaactcgtttttctctttcccttttgtt-aaaataagtgat 635  Q
    ||||||||||||||| ||||||||||||||| || || ||||||||||||    
T  5327989 tcacccctctaactcatttttctctttccctattattgaaaataagtgat 5328038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 615
Target Start/End: Complemental strand, 7269596 - 7269527
Alignment:
Q  546 tatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcc 615  Q
    ||||||| || ||||||||||  |||||||||||  | ||||||||| ||||||||| |||| |||||||    
T  7269596 tatcaaatagaggtgatttagagtcaatttttgaccctaaatcacccttctaactcgcttttttctttcc 7269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 582 - 635
Target Start/End: Complemental strand, 16996982 - 16996930
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||| |||||| ||| |||||| || |||||||||||    
T  16996982 caaaatcacccctctaactcg-ttttctattttccttttattgaaataagtgat 16996930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 1215470 - 1215382
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| ||||  |||||  ||||||||||  | |||||||| |||||| || |||||||| ||| ||||| || |||||||||||    
T  1215470 atcaaagagcggtggattagggccaatttttgaccccaaatcaccgctctaaatcatttttctccttctcttttatttaaataagtgat 1215382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 629
Target Start/End: Complemental strand, 5917866 - 5917790
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaata 629  Q
    ||||||||||||||| |  |||||||  ||  |||||||||||||||| |||| ||||||||||||||||  ||||||||    
T  5917866 aaagaggggtgattttgagtcaattt--gacccaaaatcacccctctagctcg-ttttctctttccctttaattaaaata 5917790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 635
Target Start/End: Original strand, 6833471 - 6833551
Alignment:
Q  557 ggtgatttaggatcaatttttgattcaaaa-tcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||| | |||||||||||   ||||  |||||||||||||    
T  6833471 ggtgatttaggattaatttttgacccaaaaatcacccctctaactggttttttctctttttattttaataaaataagtgat 6833551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 31147931 - 31147844
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| || ||||||||| |||||||||||  ||||||  | | |||| |||||||||||| ||||||||| || | |||||||||    
T  31147931 atcaaagaaggatgatttagggtcaatttttgacccaaaattgctcatcta-ctcgtttttctcgttcccttttattgacataagtgat 31147844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 635
Target Start/End: Original strand, 41996568 - 41996616
Alignment:
Q  587 tcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||| |||||||||||||||| | |||||||||| || |||||||||||    
T  41996568 tcacacctctaactcgtttttgtatttcccttttattgaaataagtgat 41996616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 9661815 - 9661924
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| |||||||| |||||||||| || |    
T  9661815 ctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttctttttcccttttattga 9661914  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  9661915 aataagtgat 9661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 16991834 - 16991943
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||| ||||||||||| |||||||||||  ||||||||||| |||||||||||||||| |||||||||| || |    
T  16991834 ctagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatctaactcgtttttctatttcccttttattga 16991933  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  16991934 aataagtgat 16991943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 519 - 620
Target Start/End: Original strand, 28588516 - 28588617
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    |||||| ||||||||||||||| |  | |||| ||| |||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28588516 caaaatcctagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttccctt 28588615  T
Q  619 tt 620  Q
    ||    
T  28588616 tt 28588617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 547 - 631
Target Start/End: Original strand, 41486558 - 41486642
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataag 631  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||    
T  41486558 atcaaagaggggttatttagggtcaatttttgatccaaaatcacccctctaactcgtttttctctttcccttatattgaaataag 41486642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 4634245 - 4634354
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||| | |||||||||||  ||||||||||||||||||| |||||||  |||||||||| || |    
T  4634245 ctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaacttgtttttccttttcccttttattga 4634344  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  4634345 aataagtgat 4634354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 23067973 - 23067891
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| |||||||||||  | |||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  23067973 gaggggtgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 23067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 54420864 - 54420755
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | |||||| |||||||||||| |||||||||||  ||||||||| |||||||||||||||||| ||| |||||| || |    
T  54420864 ctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcactcctctaactcgtttttctattttccttttattga 54420765  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  54420764 aataagtgat 54420755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 3673608 - 3673694
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||||  | ||||||||||||||| ||||||||||| |||| |||| || |||||||||||    
T  3673608 caaagaggggtgatttagggtcaatttttgaccccaaatcacccctctaaatcgtttttctccttcctttttatttaaataagtgat 3673694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 11817055 - 11817143
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||| |||||| | || ||||||  ||||||||||||||||  ||||||||||| |||||||||||| |||||||||||    
T  11817055 atcaaagaggggtggtttagggttaagttttgacccaaaatcacccctctacatcgtttttctccttcccttttgtttaaataagtgat 11817143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 4622839 - 4622753
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt-ttgttaaaataagtgat 635  Q
    |||||||||||||||| | |||||||||||| |||||||||| || || ||||||||||||||||| || || ||||||||||||||    
T  4622839 aaagaggggtgatttaaggtcaatttttgatccaaaatcacctctgtatctcgtttttctctttcctttcttattaaaataagtgat 4622753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 46729048 - 46728963
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||||  |||||||| |||||||| | |||||||| |||||||||| || |||||||||||    
T  46729048 caaagaggggtgatttagggtcaatttttgacccaaaatca-ccctctaatttgtttttctatttcccttttattgaaataagtgat 46728963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 5388501 - 5388586
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| |||||||||||    ||||||||||||||| ||||||||||| |||||| || || |||||||||||    
T  5388501 aaagaggggtgatttagggtcaatttttgaactcaaatcacccctctaaatcgtttttctccttccctcttatttaaataagtgat 5388586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 14542643 - 14542555
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||| |||||||||||  |||||||| | |||||||| |||||||  ||||| |||| || |||||||||||    
T  14542643 atcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttttccttttcctttttattgaaataagtgat 14542555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 635
Target Start/End: Complemental strand, 37869598 - 37869460
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctc 595  Q
    |||||| |||||||| || ||  |||||  ||||||||||||||| |  | || ||||||  |||||||||| |||||| || |  |||||||| |||||    
T  37869598 ctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatccattaaagagatgtgatttagggtcaattgtttac-caaaatcatccctc 37869500  T
Q  596 taactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||||||||| || |||||||||||    
T  37869499 taactcgtttttatctttcccttttattgaaataagtgat 37869460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 1646070 - 1645984
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| | ||||||||| | |||| ||||  ||||||||||||||||||||||||||||||||| ||||| || |||||| ||||    
T  1646070 caaagagagatgatttagggttaattgttgacccaaaatcacccctctaactcgtttttctctttctcttttattgaaataaatgat 1645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 3169025 - 3169111
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||||||  |||||| ||||  |||||||||||||||||||||||||| |||||| ||||| || |||||| ||||    
T  3169025 caaagagaggtgatttagagtcaattattgacccaaaatcacccctctaactcgtttttttctttctcttttattgaaataaatgat 3169111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 635
Target Start/End: Original strand, 12519650 - 12519727
Alignment:
Q  557 ggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| |||||||||| || |||||||||  | ||||||||||||||||||||||||||| || |||||||||||    
T  12519650 ggtgatttatgatcaatttt-gactcaaaatcaatcatctaactcgtttttctctttcccttttattgaaataagtgat 12519727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 561 - 635
Target Start/End: Complemental strand, 34115769 - 34115695
Alignment:
Q  561 atttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| |||||||||||  ||||||||||||||||  ||||||||||||||||||||| || ||| |||||||    
T  34115769 atttagggtcaatttttgacccaaaatcacccctctagttcgtttttctctttcccttttattgaaagaagtgat 34115695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 52555846 - 52555764
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||  ||||||||||  |||||||||| ||||||||||||||||| |||  ||||| || |||||||||||    
T  52555846 gaggggtgatttagggacaatttttgacccaaaatcacctctctaactcgtttttctatttatcttttattgaaataagtgat 52555764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 598
Target Start/End: Complemental strand, 1657722 - 1657650
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaa 598  Q
    ||||||||||||||| |  | ||||||||| ||||||||||| |||||||||||  |||||||||||||||||    
T  1657722 ctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaa 1657650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 556 - 615
Target Start/End: Complemental strand, 4959697 - 4959638
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcc 615  Q
    |||||||||||| |||||||||||| |||||||| | ||||||||| |||||||||||||    
T  4959697 gggtgatttagggtcaatttttgatccaaaatcatcactctaactcatttttctctttcc 4959638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 525 - 635
Target Start/End: Original strand, 6408400 - 6408511
Alignment:
Q  525 tctagtttcttctcctacgcctatcaaagagg-ggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgtt 623  Q
    |||||||||||||||| |  | | |||||||| ||||||| ||| ||||||||| |  |||||||||| || |||||||||||| | |||||||||||||    
T  6408400 tctagtttcttctccttcatccaccaaagaggaggtgattaagggtcaattttttacccaaaatcacctctttaactcgtttttatatttcccttttgtt 6408499  T
Q  624 aaaataagtgat 635  Q
     |||||| ||||    
T  6408500 gaaataattgat 6408511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 38434618 - 38434669
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  38434618 aaatcacccctctaactcgtttttctatttctcttttattaaaataagtgat 38434669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 519 - 635
Target Start/End: Complemental strand, 30416781 - 30416664
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttccct 617  Q
    ||||||||||||||||||  || |  | | |||| |||||| ||||| | |||||||||||  ||||||||| ||||||||| | ||||||| |||||||    
T  30416781 caaaattctagtttcttcatcttcatccaccaaaaaggggtaatttatggtcaatttttgaaccaaaatcacacctctaacttgttttttctatttccct 30416682  T
Q  618 tttgttaaaataagtgat 635  Q
    ||| || |||||||||||    
T  30416681 tttattgaaataagtgat 30416664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 547 - 632
Target Start/End: Complemental strand, 46775986 - 46775902
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||||||| ||||| | |||||||||||||  |||||||| | ||||| |||||||||||||||||||||  || ||||||||    
T  46775986 atcaaagagggatgatt-atgatcaatttttgacccaaaatcatcactctatctcgtttttctctttccctttaattgaaataagt 46775902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 23926024 - 23926112
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||  ||| || ||| ||||||||   ||||||||||||||||| ||||||||| ||||||| | || |||||||||||    
T  23926024 atcaaagaggggtagttttgggtcattttttgatctcaaatcacccctctaacttgtttttctccttcccttctatttaaataagtgat 23926112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 51646076 - 51646164
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| | ||||||| | ||||||||| |   |||||||||||||||| |||||||| | |||||||||| || |||||||||||    
T  51646076 atcaaagagagatgatttatggtcaatttttaacctaaaatcacccctctaattcgtttttttatttcccttttattgaaataagtgat 51646164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 635
Target Start/End: Original strand, 53903617 - 53903681
Alignment:
Q  571 aatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||  | ||||||| |||||||||||||||||| |||||||||| || |||||||||||    
T  53903617 aatttttgaccctaaatcactcctctaactcgtttttctatttcccttttattgaaataagtgat 53903681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 635
Target Start/End: Original strand, 42972030 - 42972109
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||||||||  ||||||||| | ||||||| |||||||| |||  ||||| || |||||||||||    
T  42972030 gggtgatttagggtcaatttttgacccaaaatcactcatctaacttgtttttctattttgcttttattgaaataagtgat 42972109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 43156761 - 43156847
Alignment:
Q  549 caaagaggggtgattta-ggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| || |||||||||||  |||||||||||||||||| || |||| | ||||| |||| || |||||||||||    
T  43156761 caaagaggggtgatttacgggtcaatttttgacccaaaatcacccctctaacacg-ttttatatttcctttttattgaaataagtgat 43156847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 9549485 - 9549538
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| | |||||||||||||||||||| |||||| || |||||||||||    
T  9549485 caaaatcacacttctaactcgtttttctcttttccttttattgaaataagtgat 9549538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 613
Target Start/End: Complemental strand, 7242898 - 7242834
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctcttt 613  Q
    |||| ||||| |||||||| |||||||||||  ||||||||||  ||||||| ||||||||||||    
T  7242898 caaaaaggggcgatttagggtcaatttttgacccaaaatcacctttctaacttgtttttctcttt 7242834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 614
Target Start/End: Complemental strand, 29577209 - 29577149
Alignment:
Q  554 aggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttc 614  Q
    |||||||||||||| ||| ||||||| |||||||  |||||||| ||||||||||| ||||    
T  29577209 aggggtgatttagggtcactttttgactcaaaatatcccctctatctcgtttttctttttc 29577149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 635
Target Start/End: Original strand, 35338389 - 35338465
Alignment:
Q  559 tgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| |||| ||||||  | |||||||| || |||||| || ||||||||||||| |||| |||||||||||    
T  35338389 tgatttagggtcaaattttgaccctaaatcacctctgtaactcattcttctctttcccttatgttgaaataagtgat 35338465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 609
Target Start/End: Complemental strand, 44375384 - 44375333
Alignment:
Q  558 gtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttct 609  Q
    |||||||| | ||||||||||| |||||||||| ||||||| ||||||||||    
T  44375384 gtgatttaaggtcaatttttgactcaaaatcactcctctaattcgtttttct 44375333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 584 - 635
Target Start/End: Complemental strand, 46716988 - 46716937
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| ||||||||||||||||| ||| |||||| || |||||||||||    
T  46716988 aaatcacctctctaactcgtttttctattttccttttattgaaataagtgat 46716937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 578
Target Start/End: Complemental strand, 33289384 - 33289326
Alignment:
Q  520 aaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttg 578  Q
    |||||| ||||||| | |||| || |||||||||| ||||| |||||||||||||||||    
T  33289384 aaaattttagtttcgtttccttcgtctatcaaagatgggtggtttaggatcaatttttg 33289326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 28990328 - 28990369
Alignment:
Q  594 tctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  28990328 tctaactcgtttttctctttctcttttattgaaataagtgat 28990369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 620
Target Start/End: Original strand, 32188989 - 32189038
Alignment:
Q  571 aatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||||||||| | | ||||||||||||| |||||||||| ||||||||||    
T  32188989 aatttttgatcctatatcacccctctaattcgtttttctttttccctttt 32189038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 602
Target Start/End: Complemental strand, 38546290 - 38546188
Alignment:
Q  498 ttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctcta 597  Q
    |||| ||||||||  ||||  |||||| |||||||||| |||  |  |||||||||||||| |||||| | ||||  |||||  ||||||||||||||||    
T  38546290 ttctctcttgtgagtcatcaccaaaatcctagtttcttttccgtcatctatcaaagaggggagatttaaggtcaa--tttgacccaaaatcacccctcta 38546193  T
Q  598 actcg 602  Q
    |||||    
T  38546192 actcg 38546188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 599 - 635
Target Start/End: Original strand, 2945172 - 2945208
Alignment:
Q  599 ctcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||| || |||||||||||    
T  2945172 ctcgtttttctctttcccttttattgaaataagtgat 2945208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 496 - 635
Target Start/End: Original strand, 3602917 - 3603056
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctc 595  Q
    |||||| |||||||| || ||  |||||| ||||||||||||||| |  | |||||||| |||||||||| | |||| |||||| |||||||||||||||    
T  3602917 ctttctctcttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcacccctc 3603016  T
Q  596 taactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||||||||| |||||| || |||||||||||    
T  3603017 taacttgtttttctcttttccttttcttgaaataagtgat 3603056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 498 - 632
Target Start/End: Complemental strand, 25237506 - 25237372
Alignment:
Q  498 ttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctcta 597  Q
    |||| |||||||| ||||||| |||| |||||||| ||||||| |  |||| |||||||||||||||||  |||| ||||||| |||||||||| ||| |    
T  25237506 ttctctcttgtgagccatcgttaaaactctagtttattctccttcatctattaaagaggggtgatttagagtcaacttttgatccaaaatcacctctcga 25237407  T
Q  598 actcgtttttctctttcccttttgttaaaataagt 632  Q
    ||| ||||||| |||||||||||||| ||||||||    
T  25237406 acttgtttttccctttcccttttgttgaaataagt 25237372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 3390394 - 3390503
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| |||||||  |||||||||| || |    
T  3390394 ctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttccttttcccttttattga 3390493  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  3390494 aataagtgat 3390503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 25771407 - 25771516
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| |||||||  |||||||||| || |    
T  25771407 ctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttccttttcccttttattga 25771506  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  25771507 aataagtgat 25771516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 7640481 - 7640399
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 7640399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 37883638 - 37883724
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  37883638 caaagaggggtgatttagggtcaatttttaatccaaaatcacccctctaattcgtttttctatttcctttttattaaaataagtgat 37883724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 530 - 635
Target Start/End: Original strand, 6089859 - 6089964
Alignment:
Q  530 tttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaata 629  Q
    ||||||||||| |  | ||||||||||||||||||| | |||||||||||  ||||||||||||||||| |||||||||| |||||||||| || |||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaattcgtttttctatttcccttttattgaaata 6089958  T
Q  630 agtgat 635  Q
    ||||||    
T  6089959 agtgat 6089964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 25516456 - 25516565
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||||||||||||| ||||| |||||  |||||||||||||||||||| ||||||| |||||||||| || |    
T  25516456 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctctaactcatttttctatttcccttttattga 25516555  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  25516556 aataagtgat 25516565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 27191487 - 27191378
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||| ||||||||| |||||||||||  | |||||||||||||||||||||||||| |||||||||| || |    
T  27191487 ctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttttattga 27191388  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  27191387 aataagtgat 27191378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 27841301 - 27841192
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||| ||||||||| |||||||||||  | |||||||||||||||||||||||||| |||||||||| || |    
T  27841301 ctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttttattga 27841202  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  27841201 aataagtgat 27841192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 25623176 - 25623088
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||  ||||||||||||  ||||||||||| | ||||||||||||||||||||||||| || |||||||||||    
T  25623176 atcaaagaggggtgatttattatcaatttttgacccaaaatcacccatataactcgtttttctctttcccttttattgaaataagtgat 25623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 519 - 635
Target Start/End: Complemental strand, 27024298 - 27024182
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    ||||| |||||||||||||||| |  | |||||||| |||||||||||| ||| |||||||  ||||||||||||||||||| |||||||  ||||||||    
T  27024298 caaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctctaacttgtttttccttttccctt 27024199  T
Q  619 ttgttaaaataagtgat 635  Q
    || || |||||||||||    
T  27024198 ttattgaaataagtgat 27024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 29812746 - 29812658
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| ||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||| |||||| || |||||||||||    
T  29812746 atcaaagagaggtgatttagggtcaatttttgacacaaaatcacccctctaactcatttttctctttaccttttattgaaataagtgat 29812658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 3464944 - 3465030
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||| ||| |||||| || |||||||||||    
T  3464944 caaagaggggtgatttagggtcaatttttgatccaaaatcaccacactaactcgtttttctattttccttttattgaaataagtgat 3465030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 631
Target Start/End: Original strand, 41841883 - 41842017
Alignment:
Q  498 ttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaa-tcacccctct 596  Q
    |||||| ||||||||||||  ||||| |||||||| ||||||| |  | |||| |||||| ||||||| | |||||||||||  ||||| |||||||| |    
T  41841883 ttcttttttgtgaaccatcaccaaaactctagttttttctccttcatccatcatagagggttgatttatggtcaatttttgacccaaaaatcaccccttt 41841982  T
Q  597 aactcgtttttctctttcccttttgttaaaataag 631  Q
    |||||||||||||||||||||||| || |||||||    
T  41841983 aactcgtttttctctttcccttttattgaaataag 41842017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 549 - 634
Target Start/End: Complemental strand, 42105881 - 42105796
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtga 634  Q
    |||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||||||| |||||||||| || ||||||||||    
T  42105881 caaagaggggtgctttagggtcaatttttgacccaaaatcaccactctaactcgtttttctatttcccttttattgaaataagtga 42105796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 498 - 635
Target Start/End: Original strand, 40125323 - 40125460
Alignment:
Q  498 ttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctcta 597  Q
    |||| |||||||| || || ||||||   |||||||||||||| |  | | ||||||||||||||||||| | |||||||||  ||||||||||||||||    
T  40125323 ttctctcttgtgagccgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctcta 40125422  T
Q  598 actcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||| |||||||| |||| ||||| || ||||| |||||    
T  40125423 acttgtttttctatttctcttttattgaaatacgtgat 40125460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 10589023 - 10589110
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||| |||||||||||||| |||||||||||  ||||||||||||||||||| | ||||||| |||||||||| || |||||||||||    
T  10589023 caaaaaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgttttttctatttcccttttattgaaataagtgat 10589110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 5930408 - 5930494
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||||||| | |||||||||  |||||||| ||||||||||||||||||| |||||||||| ||  ||||||||||    
T  5930408 caaagagaggtgatttagggttaatttttgacccaaaatcatccctctaactcgtttttctgtttcccttttatttcaataagtgat 5930494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 26491288 - 26491374
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||||| | |||||||||||  ||||||||||||| |||||| ||||||| |||||||||| || |||||||||||    
T  26491288 caaagaggggtaatttaagttcaatttttgacccaaaatcacccctttaactcatttttctatttcccttttattgaaataagtgat 26491374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 41176824 - 41176934
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgtta 624  Q
    ||||||||||||||| |  | | ||||||||||||||||||| |||||||||||  ||||| ||||| ||||||||| ||||||| |||| ||||| ||     
T  41176824 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccacccatctaactcgttttttctatttctcttttattg 41176923  T
Q  625 aaataagtgat 635  Q
    |||||||||||    
T  41176924 aaataagtgat 41176934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 632
Target Start/End: Complemental strand, 44167861 - 44167755
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | |||||||||||||| || | |||||||||||  |||||||||||||||||||||||||||| ||| |||||  || |    
T  44167861 ctagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctctaactcgtttttctattttcctttaattga 44167762  T
Q  626 aataagt 632  Q
    |||||||    
T  44167761 aataagt 44167755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 635
Target Start/End: Original strand, 43566840 - 43566946
Alignment:
Q  527 tagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaa 626  Q
    |||||||||||||| |  | | ||||||||||||||| ||| |||||||||||  ||||||||||| |||||||||||||||| ||||| |||| || ||    
T  43566840 tagtttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatcaccc-tctaactcgtttttctatttcctttttattgaa 43566937  T
Q  627 ataagtgat 635  Q
    |||||||||    
T  43566938 ataagtgat 43566946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 635
Target Start/End: Original strand, 19953582 - 19953641
Alignment:
Q  576 ttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||  ||||||||||||||||||||||||||| || |||||||||||    
T  19953582 ttgattcaaaatcacctatctaactcgtttttctctttcccttttattgaaataagtgat 19953641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 19581131 - 19581045
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgt-ttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| || ||||||||| |  |||||||||||||||||||||| |||| | |||||||||| || |||||||||||    
T  19581131 aaagaggggtgattttgggtcaatttttaacacaaaatcacccctctaactcgttttttttatttcccttttattgaaataagtgat 19581045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 13268560 - 13268644
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccc-tctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||| | ||| |||||||  |||||||||||| ||||||||||||| ||||| |||||||||| |||||||||||    
T  13268560 aaagaggggtgatttatggtca-tttttgaaccaaaatcaccccctctaactcgtttt-ctcttgcccttttgttgaaataagtgat 13268644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 9715676 - 9715587
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgt-ttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| | |||||||||||| |||||||||||| |||||||| | ||| ||||||| |||||| ||| |||||| || |||||||||||    
T  9715676 atcaaaaatgggtgatttagggtcaatttttgatccaaaatcatctctccaactcgttttttcttttttccttttattgaaataagtgat 9715587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 607
Target Start/End: Complemental strand, 15674102 - 15674045
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt 607  Q
    |||||||||||||||||| |||||||||||  ||||||||| ||||||||| ||||||    
T  15674102 aaagaggggtgatttagggtcaatttttgacccaaaatcactcctctaacttgttttt 15674045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 635
Target Start/End: Original strand, 34479911 - 34480027
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    ||||| |||||||||||||| | |  | |||||||| || |||| |||| ||||||||| |  ||||||||||| | |||| |  |||||||||||||||    
T  34479911 caaaactctagtttcttctcattcatccatcaaagatggatgatatagggtcaattttttacccaaaatcacccttataacacaattttctctttccctt 34480010  T
Q  619 ttgttaaaataagtgat 635  Q
    || || |||||||||||    
T  34480011 ttattgaaataagtgat 34480027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 613
Target Start/End: Complemental strand, 16880087 - 16880024
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctcttt 613  Q
    |||||||||||||||  | |||||||||||  ||||||||||||||| ||||||||||| ||||    
T  16880087 aaagaggggtgatttttggtcaatttttgacccaaaatcacccctctcactcgtttttcccttt 16880024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 526 - 632
Target Start/End: Original strand, 36507893 - 36507999
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||  ||||| ||||| |||||||||||  |||||||||| |||| |||| ||||||| ||| |||||| || |    
T  36507893 ctagtttcttctccttcatccaccaaagaatggtgacttagggtcaatttttgacccaaaatcacctctctgactcatttttctattttccttttattga 36507992  T
Q  626 aataagt 632  Q
    |||||||    
T  36507993 aataagt 36507999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 574
Target Start/End: Original strand, 44951435 - 44951512
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatt 574  Q
    |||||| |||||| |||| |||||||||| ||||||||||||||| |  | | ||||||||||||||||||| ||||||    
T  44951435 ctttctctcttgt-aaccgtcgtcaaaatcctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatt 44951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 2251473 - 2251388
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||| || |||| ||||||  | ||||||| ||||||| ||||||||||| ||||||| | || |||||||||||    
T  2251473 aaagaggggtggttttgggtcaaattttgaccccaaatcactcctctaaatcgtttttctccttcccttctatttaaataagtgat 2251388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 635
Target Start/End: Original strand, 29734193 - 29734261
Alignment:
Q  568 atcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| ||||||  ||||||||| ||||||||||| ||||||| |||||||||| || |||||||||||    
T  29734193 atcaaattttgacccaaaatcactcctctaactcgttttttctatttcccttttattgaaataagtgat 29734261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 44441369 - 44441457
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| |||||| ||||  |||||||||||  |||||||||   |||||||||||||| |||||| ||||| |  |||||||||||    
T  44441369 atcaaagatgggtgacttagagtcaatttttgacccaaaatcacttatctaactcgtttttatctttctcttttatcgaaataagtgat 44441457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 578
Target Start/End: Complemental strand, 4878854 - 4878795
Alignment:
Q  519 caaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttg 578  Q
    ||||| |||||||||||| ||| | || ||||||||||||||||||||| |||| |||||    
T  4878854 caaaactctagtttcttcaccttcacccatcaaagaggggtgatttagggtcaacttttg 4878795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 5071501 - 5071413
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||||| |||| | |||||||||||    ||||||||| ||||| ||||||||||  ||| ||||| || |||||||||||    
T  5071501 atcaacgaggggtggtttatggtcaatttttgaccttaaatcacccttctaaatcgtttttcttcttctcttttatttaaataagtgat 5071413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 24470357 - 24470466
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | |||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||| |||||||||| || |    
T  24470357 ctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattga 24470456  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  24470457 aataagtgat 24470466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 24475305 - 24475414
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | |||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||| |||||||||| || |    
T  24475305 ctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattga 24475404  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  24475405 aataagtgat 24475414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 530 - 635
Target Start/End: Original strand, 40775233 - 40775338
Alignment:
Q  530 tttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaata 629  Q
    ||||||||||| |  | ||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||  |||||||||| || |||||    
T  40775233 tttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcacccctataactcgtttttccttttcccttttattgaaata 40775332  T
Q  630 agtgat 635  Q
    ||||||    
T  40775333 agtgat 40775338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 25855342 - 25855263
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  25855342 gggtgatttagggtcaatttttgatccaaaatcatccctctaactcgtttttctctttcccttttattgaaataagtgat 25855263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 47749719 - 47749805
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| | |||||||||||  |||||||||||||||| |||||||||||||||||||||| || |||||||||||    
T  47749719 caaagaggggtgatttatggtcaatttttgacccaaaatcacccctctatctcgtttttctctttcccttttattgaaataagtgat 47749805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 28015342 - 28015428
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||| |||||||||| || |||||||||||    
T  28015342 aaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgttttttctatttcccttttattgaaataagtgat 28015428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 49166889 - 49166998
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | |||||| |||||||||||| |||||||||||   |||||||||||||||||| |||||||| |||||||||| || |    
T  49166889 ctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctctaacttgtttttctatttcccttttattga 49166988  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  49166989 aataagtgat 49166998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 547 - 633
Target Start/End: Original strand, 16263370 - 16263457
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt-ctctttcccttttgttaaaataagtg 633  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| || |||| ||||| || |||||||||    
T  16263370 atcaaagaggggtgatttaggatcaatttttgatccaaaatcacctctctaacttgtttttcctatttctcttttattgaaataagtg 16263457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 8611750 - 8611665
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| ||  |||||||  ||| |||||||||||||||||||||||| |||||||||| || |||||||||||    
T  8611750 aaagaggggtgatttagggtctctttttgacccaatatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 8611665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 23732524 - 23732436
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||  |||| || ||||| |||||    
T  23732524 atcaaagaggggtgatttaaggtcaatttttgactcaaaatcacttctctaactcgtttttctctttctattttattgaaatatgtgat 23732436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 545 - 635
Target Start/End: Original strand, 22751420 - 22751510
Alignment:
Q  545 ctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||| ||| |||| |||||| ||||||||||||||   |||||||||| ||||||||||||| || |||||||||| ||||||||||||||    
T  22751420 ctattaaaaagggatgattttggatcaatttttgagataaaatcacccttctaactcgttttactatttcccttttattaaaataagtgat 22751510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 29804805 - 29804719
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||| |||||||||||  | ||||||||||||||| ||||||||||| ||||||| | || |||||||||||    
T  29804805 caaagaggggtggtttagggtcaatttttgaccccaaatcacccctctaaatcgtttttctccttcccttctatttaaataagtgat 29804719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 30992948 - 30992866
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||| | | |||||||||  ||||||||||||||||||| |||||||| |||||||||| || |||||||||||    
T  30992948 gaggggtgatttaaggttaatttttgacccaaaatcacccctctaacttgtttttctatttcccttttattgaaataagtgat 30992866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 635
Target Start/End: Original strand, 44681454 - 44681532
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||||||||   |||||||||| |||||||||||||||| |||||||||| || |||||||||||    
T  44681454 gggtgatttaggttcaatttttgacctaaaatcaccc-tctaactcgtttttctttttcccttttattgaaataagtgat 44681532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 635
Target Start/End: Complemental strand, 13008793 - 13008716
Alignment:
Q  557 ggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||||||||| ||||||||| |||| ||||||| ||||||||||||| ||||| || |||||||||||    
T  13008793 ggtgatttagggtcaatttttaattcaaaataaccc-tctaactagtttttctctttctcttttattgaaataagtgat 13008716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 631
Target Start/End: Complemental strand, 43807271 - 43807197
Alignment:
Q  557 ggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataag 631  Q
    ||||||||| | |||||||||||  |||||||||| ||||||||||||||||| |||| ||||| ||||||||||    
T  43807271 ggtgatttatggtcaatttttgacccaaaatcacctctctaactcgtttttctatttctcttttattaaaataag 43807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 37399645 - 37399697
Alignment:
Q  583 aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||||    
T  37399645 aaaatcacccctctaactcgtttttctctttcccttttattgaaataaatgat 37399697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 635
Target Start/End: Complemental strand, 33530599 - 33530511
Alignment:
Q  545 ctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||||| ||||  |||||  ||||| |||||||||||| ||||||||| ||||  |||| || |||||||||||    
T  33530599 ctatcaaagaggggtgatttagggtcaa--tttgacccaaaaccacccctctaacccgtttttctttttcttttttattgaaataagtgat 33530511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 21329424 - 21329339
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||| |||||||||||  |||| |||||||||||| ||||||| ||| ||||||| | || |||||||||||    
T  21329424 caaagaggggtggtttagggtcaatttttgacccaaa-tcacccctctaaatcgttttcctcattcccttctatttaaataagtgat 21329339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 42490720 - 42490773
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||||| |||||||||| |  |||||||||||    
T  42490720 caaaatcacccctctaactcgtttttctttttcccttttatcgaaataagtgat 42490773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 635
Target Start/End: Original strand, 7985883 - 7985963
Alignment:
Q  555 ggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||| |||| ||||||   |||| || |||||||||||||||||||||||||||| | || |||||| ||||    
T  7985883 ggggtgatttagggtcaacttttgacctaaaaccatccctctaactcgtttttctctttcccttctattgaaataaatgat 7985963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 9933866 - 9933918
Alignment:
Q  583 aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| || ||||| |||||||||| ||||||||||||||    
T  9933866 aaaatcacccctctaactagtatttctatttcccttttattaaaataagtgat 9933918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 615
Target Start/End: Complemental strand, 24045363 - 24045295
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcc 615  Q
    ||||||||| ||||||||| | |||||||||||  ||||||||||| |||||| | |||||||||||||    
T  24045363 atcaaagagtggtgatttaaggtcaatttttgacccaaaatcacccgtctaacacatttttctctttcc 24045295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 635
Target Start/End: Original strand, 47156388 - 47156465
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||| | |||||||||||| |||||||| ||||||||||||  ||||| ||| |||||| || |||||||||||    
T  47156388 gggtgatttaaggtcaatttttgatccaaaatcatccctctaactcg--tttctattttccttttattgaaataagtgat 47156465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 8319299 - 8319386
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| |||||||| | |||| ||||||  ||||||||||| | ||||||| ||||||| ||||| |||| ||||||||||||||    
T  8319299 caaagaggagtgatttatggtcaacttttgacccaaaatcacccatgtaactcgttttttctttttccattttattaaaataagtgat 8319386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 10250603 - 10250524
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||  ||| |||||||| ||| ||||||||||||||||| ||||||||||  |||| |||| || |||||||||||    
T  10250603 gggtgataaagggtcaattttcgatccaaaatcacccctctaattcgtttttctaattcctttttattgaaataagtgat 10250524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 635
Target Start/End: Complemental strand, 14734181 - 14734092
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt-ctctttcccttttgttaaaataagtgat 635  Q
    |||||||| ||||| |||||| |||||||||||  | |||||||||||||||  ||||||| ||| ||||||| | || |||||||||||    
T  14734181 atcaaagaagggtggtttagggtcaatttttgaccccaaatcacccctctaaaacgtttttcctcattcccttctatttaaataagtgat 14734092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 35141882 - 35141794
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctcttt--cccttttgttaaaataagtgat 635  Q
    |||||| |||||||||||| |||||||||||   |||||||||| |||||||| ||||| |||||   |||||| || |||||||||||    
T  35141882 caaagaagggtgatttagggtcaatttttgaccaaaaatcacccttctaactcatttttgtcttttaaccttttattgaaataagtgat 35141794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 26017753 - 26017701
Alignment:
Q  583 aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||| |||||||| | |||||||||| || |||||||||||    
T  26017753 aaaatcacccctctaattcgtttttttatttcccttttattgaaataagtgat 26017701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 635
Target Start/End: Original strand, 39090127 - 39090187
Alignment:
Q  576 ttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||||||| |||||||||| ||||||| |||||||||| || |||||||||||    
T  39090127 ttgatccaaaatcacctctctaactcgttttttctatttcccttttattgaaataagtgat 39090187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 43483581 - 43483637
Alignment:
Q  551 aagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt 607  Q
    |||||| |||||||||| ||||||||||||  ||||||| |||||||||| ||||||    
T  43483581 aagaggagtgatttagggtcaatttttgatctaaaatcatccctctaacttgttttt 43483637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 635
Target Start/End: Complemental strand, 38649482 - 38649400
Alignment:
Q  554 aggggtgatttaggatcaatttttgattcaaaatcacccctctaa-ctcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||  |||||||||||  |||||||||||||||||  |  ||||||| ||| |||||| || |||||||||||    
T  38649482 aggggtgatttagagtcaatttttgacccaaaatcacccctctaatttattttttctattttccttttattgaaataagtgat 38649400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 15124076 - 15124023
Alignment:
Q  583 aaaatcacccctctaactc-gtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||  |||||| |||||||||||| || |||||||||||    
T  15124076 aaaatcacccctctaactaagtttttatctttcccttttattgaaataagtgat 15124023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 619
Target Start/End: Complemental strand, 23177740 - 23177640
Alignment:
Q  520 aaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttg-attcaaaatcacccctctaactcgtttttctctttccctt 618  Q
    |||| |||||||||||||||| |  | || ||||| | |||||||| | |||||||||  |  ||||||||| ||||||||| |||||||||||| ||||    
T  23177740 aaaactctagtttcttctccttcatccattaaagatgagtgatttaaggtcaatttttttacccaaaatcactcctctaactagtttttctcttttcctt 23177641  T
Q  619 t 619  Q
    |    
T  23177640 t 23177640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 635
Target Start/End: Complemental strand, 41748621 - 41748542
Alignment:
Q  558 gtgatttaggatcaatttttgattcaaaatcacccctctaactcg--tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| | |||||||||||| ||||||||| ||||||| | |  ||||||| ||| |||||| |||||||| |||||    
T  41748621 gtgatttacggtcaatttttgatccaaaatcactcctctaaattgtttttttctattttccttttattaaaataggtgat 41748542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 619
Target Start/End: Original strand, 46918385 - 46918456
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttt 619  Q
    ||||||||||  ||||||||  |||||||||||  || |||| ||||| ||||||| ||||||||||||||||    
T  46918385 atcaaagaggtatgatttagagtcaatttttgacccataatcgcccctttaactcg-ttttctctttcccttt 46918456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 6213038 - 6212929
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| || | ||||||||||||||||||| | |||||||||||  ||||||||| |||||||||||||||||  |||||||||| || |    
T  6213038 ctagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcacacctctaactcgtttttccttttcccttttattga 6212939  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  6212938 aataagtgat 6212929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 22345064 - 22344955
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | ||||||||||||||||||||| |||||||||||  ||||||||||||||||||| |||||||  |||||||||| || |    
T  22345064 ctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctctaacttgtttttccttttcccttttattga 22344965  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  22344964 aataagtgat 22344955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 496 - 635
Target Start/End: Complemental strand, 14717424 - 14717286
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctc 595  Q
    |||||| |||||||| || ||  ||||| |||||||||||||||| |  | | ||||||||||||||||||| ||||||||||| | ||| |||||| ||    
T  14717424 ctttctctcttgtgagccgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacttaaattcaccc-tc 14717326  T
Q  596 taactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||| |||||||||| || |||||||||||    
T  14717325 taactcgtttttctttttcccttttattgaaataagtgat 14717286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 635
Target Start/End: Original strand, 21326462 - 21326544
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  21326462 gaggggtgatttaggatcaatttttgaacaaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 21326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 551 - 635
Target Start/End: Original strand, 5832220 - 5832304
Alignment:
Q  551 aagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 5832304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 44562871 - 44562792
Alignment:
Q  556 gggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  44562871 gggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 44562792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 635
Target Start/End: Original strand, 38646521 - 38646655
Alignment:
Q  501 tttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaact 600  Q
    |||| ||||| |||||| ||||| |||| ||| ||||||| |  |||||||||||| |||||||| | |||||||||||  ||||||||||| | |||||    
T  38646521 tttcctgtgagccatcgccaaaactctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcacccatgtaact 38646620  T
Q  601 cgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||  ||||| || |||||||||||    
T  38646621 cgtttttctctttttcttttattgaaataagtgat 38646655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 547 - 635
Target Start/End: Original strand, 17579751 - 17579839
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| ||||| |||||||||||  |||||||| ||||||||||| |||||||||||||||||  || |||||||||||    
T  17579751 atcaaagaggggtgacttagggtcaatttttgaaccaaaatcatccctctaactcatttttctctttccctttaattgaaataagtgat 17579839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 635
Target Start/End: Complemental strand, 630909 - 630828
Alignment:
Q  554 aggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||| |||||||||||  | ||||||||| |||||||||||||||| |||||||||| || |||||||||||    
T  630909 aggggtgatttagggtcaatttttgaccctaaatcacccatctaactcgtttttctatttcccttttattgaaataagtgat 630828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 46589161 - 46589245
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||| | |||| ||||| ||||||||||||||    
T  46589161 caaagaggggtgatttatgatcaatttttgactcaaaatca-ccctctaactcg-ttttatatttctcttttattaaaataagtgat 46589245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 547 - 612
Target Start/End: Original strand, 52839504 - 52839569
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctt 612  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||| ||||    
T  52839504 atcaaagaggggtgatttatgatcaatttttgacccaaaatcacccttctaactcgtttttttctt 52839569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 635
Target Start/End: Original strand, 8893300 - 8893364
Alignment:
Q  571 aatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||||||| || |||||||||||    
T  8893300 aatttttgacccaaaatcacccttctaactcgtttttctctttcccttttattgaaataagtgat 8893364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 547 - 632
Target Start/End: Original strand, 52752015 - 52752096
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||||||| |||||||||||    ||||||| |||||||||| ||||||||||||||||| |||||||||| || ||||||||    
T  52752015 atcaaagagggatgatttaggat----ttttgatccaaaatcacctctctaactcgtttttctttttcccttttattgaaataagt 52752096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 35078019 - 35077933
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| | ||||||| |||||| ||||||  |||||||||| ||||||||||||||||||||||  |||| || |||||||||||    
T  35078019 caaagagagatgatttatgatcaaattttgacccaaaatcacctctctaactcgtttttctctttcatttttattgaaataagtgat 35077933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 44514118 - 44514032
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcg-tttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| |||||||||||  |||||||||| || ||||| | ||||||| |||||||||| || |||||||||||    
T  44514118 aaagaggggtgatttagggtcaatttttgacccaaaatcacctctttaacttgttttttctatttcccttttattgaaataagtgat 44514032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 607
Target Start/End: Original strand, 52839409 - 52839466
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt 607  Q
    |||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||||    
T  52839409 aaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaactcgttttt 52839466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 555 - 635
Target Start/End: Complemental strand, 13691881 - 13691801
Alignment:
Q  555 ggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| |||||| |||||||||||  ||||||||||||||||| ||||||||||| ||| ||| | || |||||||||||    
T  13691881 ggggtggtttagggtcaatttttgacccaaaatcacccctctaaatcgtttttctccttcacttctatttaaataagtgat 13691801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 23320448 - 23320508
Alignment:
Q  572 atttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||| || ||||||||    
T  23320448 atttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagt 23320508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 40992352 - 40992407
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgtt--aaaataagtgat 635  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  40992352 caaaatcacccctctaactcgtttttctctttcccttttattgaaaaataagtgat 40992407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 563 - 635
Target Start/End: Original strand, 45659041 - 45659113
Alignment:
Q  563 ttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||||||||  |||||||||  ||||||||||||||||||||| |||||| || |||||||||||    
T  45659041 ttagggtcaatttttgacccaaaatcactgctctaactcgtttttctctttaccttttattgaaataagtgat 45659113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 10877330 - 10877417
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttg-attcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||||| | |||||||||  |  ||||||||| ||||||||||||||||||||||||||||| || ||| |||||||    
T  10877330 caaagagtggtgatttatggtcaatttttttacccaaaatcacacctctaactcgtttttctctttcccttttattgaaaaaagtgat 10877417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 4564536 - 4564589
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||||||||||||| |||| ||||| || |||||||||||    
T  4564536 caaaatcacccctctaactcgtttttctatttctcttttattgaaataagtgat 4564589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 635
Target Start/End: Complemental strand, 15276546 - 15276493
Alignment:
Q  582 caaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||| ||| ||||||||||||||||||||||| || |||||||||||    
T  15276546 caaaatcacccatctcactcgtttttctctttcccttttattgaaataagtgat 15276493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 23257108 - 23257159
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||| ||||||||||| ||||||||||| || |||||||||||    
T  23257108 aaatcacccctctcactcgtttttccctttcccttttattgaaataagtgat 23257159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 589
Target Start/End: Complemental strand, 27469916 - 27469821
Alignment:
Q  494 ttctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatca 589  Q
    ||||||||||||||||| || ||  ||||||||||||||||||| || |  | || |||||||||||||||| | |||||||| ||  ||||||||    
T  27469916 ttctttctttcttgtgagccgtcaccaaaattctagtttcttcttcttcatccattaaagaggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 12148177 - 12148091
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||||||  ||| |||||||  |||||  ||| ||||||||||||||||| ||||| |||| || |||||||||||    
T  12148177 caaagagcggtgatttagcgtcagtttttgacccaaaaataccactctaactcgtttttctatttcctttttattcaaataagtgat 12148091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 15698230 - 15698271
Alignment:
Q  594 tctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  15698230 tctaactcgtttttctctttcccttttattgaaataagtgat 15698271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 633
Target Start/End: Complemental strand, 22032219 - 22032135
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattc-aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtg 633  Q
    ||||||||| ||||||||| |||||||||||  | |||||||||||||||| | | |||||||||| |||||| || |||||||||    
T  22032219 caaagagggatgatttagggtcaatttttgacccaaaaatcacccctctaaattg-ttttctcttttccttttattgaaataagtg 22032135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 635
Target Start/End: Original strand, 29067080 - 29067121
Alignment:
Q  594 tctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  29067080 tctaactcgtttttctctttcccttttattgaaataagtgat 29067121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 549 - 634
Target Start/End: Complemental strand, 48655195 - 48655110
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtga 634  Q
    |||| |||||||||||||  |||||||||||  |||||||||  ||  ||||| ||||| |||||||||||| || ||||||||||    
T  48655195 caaaaaggggtgatttagagtcaatttttgacccaaaatcacatctgcaactcatttttatctttcccttttattgaaataagtga 48655110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 630
Target Start/End: Original strand, 49651840 - 49651901
Alignment:
Q  569 tcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataa 630  Q
    |||||||||||| ||||||||| | |||||||||||||||| ||||| |||| || ||||||    
T  49651840 tcaatttttgatccaaaatcacacatctaactcgtttttctatttcctttttattgaaataa 49651901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 619
Target Start/End: Complemental strand, 30853965 - 30853841
Alignment:
Q  496 ctttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatca-cccct 594  Q
    |||||| |||| ||| |||||  |||||  ||||||||||||||| |  | | |||||||| |||||| | | |||||||||||  |||||||| ||||     
T  30853965 ctttctctcttttgagccatcaccaaaaccctagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcaccccca 30853866  T
Q  595 ctaactcgtttttctctttcccttt 619  Q
    |||| || |||||||||||||||||    
T  30853865 ctaagtcatttttctctttcccttt 30853841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 1767986 - 1768037
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||| ||||||||||||||||||||| || |||||| ||||    
T  1767986 aaatcactcctctaattcgtttttctctttcccttttattgaaataaatgat 1768037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 33177721 - 33177640
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||| |   ||||||||| ||||||||| || |||||||| ||||| ||||||| |||| || |||||||||||    
T  33177721 gaggggtgatttatggctaatttttgactcaaaatcatccatctaactccttttt-tctttcctttttattgaaataagtgat 33177640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 630
Target Start/End: Complemental strand, 40488491 - 40488445
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataa 630  Q
    |||||||||||||||||  |||||||||||||||||| || ||||||    
T  40488491 aaatcacccctctaacttatttttctctttcccttttattgaaataa 40488445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 635
Target Start/End: Original strand, 19759777 - 19759859
Alignment:
Q  553 gaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttcccttttattgaaataagtgat 19759859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 635
Target Start/End: Original strand, 16913290 - 16913399
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||||| ||||| ||||  || |    
T  16913290 ctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcacccctctaactcgtttttcactttcactttcattga 16913389  T
Q  626 aataagtgat 635  Q
    ||||||||||    
T  16913390 aataagtgat 16913399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 7049232 - 7049317
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||| | ||| |||||||||||||||||| || |||||||||||    
T  7049232 caaagaggggtgatttagggtcaacttttgactcaaaatcacccctc-agctcatttttctctttcccttttattgaaataagtgat 7049317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 20845013 - 20845079
Alignment:
Q  569 tcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  20845013 tcaatttttgacccaaaatcacccctctaactcgtttttctctttcccttttattgaaataagtgat 20845079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 12576606 - 12576521
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||||| |||||||||||  | ||||||||||||||||| |||||||| |||||||||  || |||||||||||    
T  12576606 aaagaggggtgatttagggtcaatttttgaccctaaatcacccctctaacttgtttttctatttccctttaattgaaataagtgat 12576521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 550 - 634
Target Start/End: Original strand, 32457632 - 32457716
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtga 634  Q
    |||||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||||||  |||| || ||||||||||    
T  32457632 aaagaggggtgatttagcgtcaatttttgacccaaaatcacccatctaactcgtttttctctttcatttttattgaaataagtga 32457716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Complemental strand, 4663949 - 4663863
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||  || |||||||||||  |||||||||||||||||| ||||||| | |||| ||||| ||||||||||||||    
T  4663949 caaagaggggtgattgtgggtcaatttttgacccaaaatcacccctctaacacgtttttatgtttctcttttattaaaataagtgat 4663863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 559 - 635
Target Start/End: Complemental strand, 15128267 - 15128192
Alignment:
Q  559 tgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||| | || |||||||||||    
T  15128267 tgatttagg-tcaatttttgtcccaaaatcacccctctaactcgtttttctctttcccttgtattgaaataagtgat 15128192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 631
Target Start/End: Complemental strand, 548991 - 548912
Alignment:
Q  552 agaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataag 631  Q
    ||||| ||||| || | |||||||||||  |||||||||||||||||||||||||||| |||||||||| || |||||||    
T  548991 agaggagtgatataaggtcaatttttgacccaaaatcacccctctaactcgtttttctttttcccttttattgaaataag 548912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 581 - 635
Target Start/End: Original strand, 1944113 - 1944167
Alignment:
Q  581 tcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||||||||    
T  1944113 tcaaaatcacccctctaactcgtttttctctttccctcttattgaaataagtgat 1944167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 635
Target Start/End: Original strand, 32804281 - 32804366
Alignment:
Q  551 aagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactc-gtttttctctttcccttttgttaaaataagtgat 635  Q
    |||| |||||||||||| |||||||||||  ||||||||||| ||||||||  |||||||||| ||||||| || |||||||||||    
T  32804281 aagatgggtgatttagggtcaatttttgacccaaaatcacccatctaactcattttttctcttacccttttattgaaataagtgat 32804366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 635
Target Start/End: Complemental strand, 13234233 - 13234151
Alignment:
Q  552 agaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||||||||| |||||||||||   |||||||||  ||||| |||||||||| |||||||||| || |||||||||||    
T  13234233 agaggggtgatttagggtcaatttttgacctaaaatcacct-tctaattcgtttttctttttcccttttattgaaataagtgat 13234151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 547 - 633
Target Start/End: Original strand, 8644228 - 8644314
Alignment:
Q  547 atcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtg 633  Q
    |||||| | |||||||||||| |||||||||||   ||||||||| ||| || || |||||||||||||||||| || |||||||||    
T  8644228 atcaaaaatgggtgatttagggtcaatttttgaccaaaaatcaccactcaaattcatttttctctttcccttttattgaaataagtg 8644314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 557 - 615
Target Start/End: Original strand, 33194598 - 33194656
Alignment:
Q  557 ggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcc 615  Q
    ||||||||||| |||||||||||| |||||||||  |||||| ||||||||||||||||    
T  33194598 ggtgatttagggtcaatttttgatccaaaatcacatctctaattcgtttttctctttcc 33194656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 23843511 - 23843467
Alignment:
Q  591 ccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  23843511 ccctctaactcgtttttctatttcccttttattaaaataagtgat 23843467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 635
Target Start/End: Original strand, 891551 - 891659
Alignment:
Q  527 tagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaa 626  Q
    |||||||||||||| |  | || |||||| ||||||| ||| || ||||||||  |||||| |||||| |||||||||||||| ||| | |||| || ||    
T  891551 tagtttcttctccttcatccattaaagagaggtgattaagggtcgatttttgacccaaaattacccctataactcgtttttctgttttcattttattgaa 891650  T
Q  627 ataagtgat 635  Q
    |||| ||||    
T  891651 ataaatgat 891659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 632
Target Start/End: Original strand, 31747945 - 31748026
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagt 632  Q
    ||||||| | ||||||||| |||||||||||  | |||  ||||||||||||||||||||||||||| |||  || ||||||||    
T  31747945 caaagagagatgatttagggtcaatttttga--ccaaaagacccctctaactcgtttttctctttccttttaattgaaataagt 31748026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 607
Target Start/End: Original strand, 10744539 - 10744622
Alignment:
Q  524 ttctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgttttt 607  Q
    ||||||||||||| ||| |  | | |||||| |||||||||||| |||| ||||||  ||||||||| ||||||||| ||||||    
T  10744539 ttctagtttcttcaccttcatccaccaaagatgggtgatttagggtcaacttttgacccaaaatcactcctctaacttgttttt 10744622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 592
Target Start/End: Complemental strand, 27575208 - 27575113
Alignment:
Q  497 tttctttcttgtgaaccatcgtcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcaccc 592  Q
    ||||||| |||||| || || ||||||||||||||| ||||| | |  | ||||||||||| |||| ||| ||||||||||||   ||||||||||    
T  27575208 tttcttttttgtgatccgtcatcaaaattctagtttattctctttcatccatcaaagagggatgatatagaatcaatttttgacctaaaatcaccc 27575113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 584 - 635
Target Start/End: Complemental strand, 33541623 - 33541572
Alignment:
Q  584 aaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||||||||| ||||||||||| ||||||| | || |||||||||||    
T  33541623 aaatcacccctctaaatcgtttttctccttcccttctatttaaataagtgat 33541572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 632
Target Start/End: Original strand, 903441 - 903525
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttt--tctctttcccttttgttaaaataagt 632  Q
    |||||| ||||||||||| | ||||||| ||  ||||| | || |||||||| ||||  ||||||||||||||||| ||||||||    
T  903441 aaagagaggtgatttagggttaattttttatcgaaaataatccgtctaactcatttttttctctttcccttttgtttaaataagt 903525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 619
Target Start/End: Original strand, 22530287 - 22530335
Alignment:
Q  571 aatttttgattcaaaatcacccctctaactcgtttttctctttcccttt 619  Q
    |||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  22530287 aatttttgacccaaaatcacccatttaactcctttttctctttcccttt 22530335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 635
Target Start/End: Complemental strand, 9800 - 9691
Alignment:
Q  526 ctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaa 625  Q
    ||||||||||||||| |  | | ||||||||| ||||||||| |||||||||||  ||||||||| |||||||||||||||||| |||||||||| || |    
T  9800 ctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcactcctctaactcgtttttctatttcccttttattga 9701  T
Q  626 aataagtgat 635  Q
    | ||||||||    
T  9700 attaagtgat 9691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 11004 - 11090
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||| ||||||||| || ||||||||||| | ||||||||||||||||||| ||||||| ||||||| || || |||||||||||    
T  11004 caaagatgggtgattttgggtcaatttttgacttaaaatcacccctctaactcatttttctttttccctcttattgaaataagtgat 11090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 635
Target Start/End: Complemental strand, 1261 - 1184
Alignment:
Q  557 ggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||| |||||||||| || |||||||||  | ||||||||||||||||||||||||||| || |||||||||||    
T  1261 ggtgatttatgatcaatttt-gactcaaaatcaatcatctaactcgtttttctctttcccttttattgaaataagtgat 1184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 559 - 635
Target Start/End: Complemental strand, 11896 - 11820
Alignment:
Q  559 tgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||||  |||||||||||  ||||||||| | |||||||||||||||| |||||||||| || |||||||||||    
T  11896 tgatttagtgtcaatttttgacccaaaatcactcatctaactcgtttttctatttcccttttattgaaataagtgat 11820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 633
Target Start/End: Original strand, 734 - 849
Alignment:
Q  518 tcaaaattctagtttcttctcctacgcctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccct 617  Q
    |||||| |||||||||||||||| |  | | |||| ||  |||||||| | |||||||||||   ||||||| | |||||||||||||| ||||||||||    
T  734 tcaaaactctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatcatcactctaactcgttttcctctttccct 833  T
Q  618 tttgttaaaataagtg 633  Q
    ||| || |||||||||    
T  834 tttattgaaataagtg 849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 561 - 635
Target Start/End: Complemental strand, 5643 - 5569
Alignment:
Q  561 atttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| ||||||||||| |||||||  ||||| |||||||||||||| |||| ||||| || |||||||||||    
T  5643 atttagggtcaatttttgactcaaaattgcccctttaactcgtttttctatttctcttttattgaaataagtgat 5569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 635
Target Start/End: Complemental strand, 12318 - 12246
Alignment:
Q  563 ttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||| |||||||||||  |||||||| | ||||| |||||| ||||||||||||||| || |||||||||||    
T  12318 ttagggtcaatttttgacccaaaatcatctctctagctcgttcttctctttcccttttattgaaataagtgat 12246  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 244620 - 244707
Alignment:
Q  550 aaagaggggtgatttaggatcaatttttgattcaa--aatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||| ||||||||| |||||||||  | | |  ||||||||||||||||||||||||||||| | |||| || |||||||||||    
T  244620 aaagagggttgatttagggtcaattttttttaccataaatcacccctctaactcgtttttctcttttctttttattgaaataagtgat 244707  T

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Target: scaffold0150 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 620
Target Start/End: Complemental strand, 10436 - 10383
Alignment:
Q  567 gatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctttt 620  Q
    |||||||||||||  ||||| ||||| ||||||| |||||||||||||||||||    
T  10436 gatcaatttttgacccaaaaccacccttctaacttgtttttctctttccctttt 10383  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 635
Target Start/End: Original strand, 36548 - 36600
Alignment:
Q  583 aaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    |||||||||| |||||||||||||||  |||||||||| || |||||||||||    
T  36548 aaaatcacccttctaactcgtttttccttttcccttttattgaaataagtgat 36600  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 635
Target Start/End: Original strand, 105037 - 105123
Alignment:
Q  549 caaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttcccttttgttaaaataagtgat 635  Q
    ||||||| |||| |||| | |||| ||||||  | |||||| |||||||  ||||||||||| ||||| |||||| |||||||||||    
T  105037 caaagagaggtggtttaaggtcaaattttgaccccaaatcagccctctacatcgtttttctccttcccctttgtttaaataagtgat 105123  T

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