View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_low_20 (Length: 412)

Name: NF21660_low_20
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_low_20
NF21660_low_20
[»] chr5 (11 HSPs)
chr5 (19-398)||(33003496-33003866)
chr5 (106-398)||(33015123-33015406)
chr5 (293-398)||(33015466-33015571)
chr5 (293-398)||(33003926-33004031)
chr5 (293-395)||(33015631-33015733)
chr5 (19-124)||(33015069-33015174)
chr5 (293-395)||(33004091-33004193)
chr5 (314-388)||(33015844-33015918)
chr5 (314-388)||(33004304-33004378)
chr5 (293-351)||(33004256-33004314)
chr5 (293-351)||(33015796-33015854)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 33003496 - 33003866
Alignment:
Q  19 acatctgatcatttaaaatagtggactaggtgggggtggaatagatgttgtaggaggtggcggtgaacttggtgttgtcggtgctgcaggtgggggtgga 118  Q
    ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  33003496 acatctgataatttaaaatagtggactaggtggaggtggagtagatgttgtaggaggtggaggtgaacttggtgtggtcggtgctgcaggtggaggtgga 33003595  T
Q  119 cttggtgttgtaggtgctgcaggtggaggtggagttggtactaatggagctgcaggagttacaggtggaggtagacttggaactaatggaggtggaggag 218  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||     
T  33003596 cttggtgttgtaggtgttgcaggtggaggtggacttggtactaatggagctgcaggagttacaggtggaggtggacttggaactaatggaactggaggaa 33003695  T
Q  219 ttagaagtggacttggtattaatggtggacttggtattaatggagttagaggagttagaggtggatttgttgtgccgggccatcctggaatgccgggaat 318  Q
    |||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33003696 ttagaactggacttggtattaatggtggacttggtattaat---------ggagttagaggtggatttgttgtgccgggccatcctggaatgccgggaat 33003786  T
Q  319 accgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33003787 accgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 33003866  T

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Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 106 - 398
Target Start/End: Original strand, 33015123 - 33015406
Alignment:
Q  106 aggtgggggtggacttggtgttgtaggtgctgcaggtggaggtggagttggtactaatggagctgcaggagttacaggtggaggtagacttggaactaat 205  Q
    |||||| |||| |||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33015123 aggtggaggtgaacttggtgttgtcggtgttgcaggtggaggtggacttggtactaatggagctgcaggagttacaggtggaggtggacttggaactaat 33015222  T
Q  206 ggaggtggaggagttagaagtggacttggtattaatggtggacttggtattaatggagttagaggagttagaggtggatttgttgtgccgggccatcctg 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  33015223 ggagctggaggagttagaagtggacttggtattaatggtggacttggtattaat---------ggagttagaggtggatttgttgtgccgggccatcctg 33015313  T
Q  306 gaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33015314 gaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccattcttct 33015406  T

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Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 33015466 - 33015571
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  33015466 ccgggccatcctggaatgcctggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcat 33015565  T
Q  393 tcttct 398  Q
    ||||||    
T  33015566 tcttct 33015571  T

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Target: chr5; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 33003926 - 33004031
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  33003926 ccgggccatcctggaatgcctggaataccgggccaagttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgtcat 33004025  T
Q  393 tcttct 398  Q
    ||||||    
T  33004026 tcttct 33004031  T

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Target: chr5; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 33015631 - 33015733
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  33015631 ccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttgcatcgccat 33015730  T
Q  393 tct 395  Q
    |||    
T  33015731 tct 33015733  T

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Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 33015069 - 33015174
Alignment:
Q  19 acatctgatcatttaaaatagtggactaggtgggggtggaatagatgttgtaggaggtggcggtgaacttggtgttgtcggtgctgcaggtgggggtgga 118  Q
    |||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||    
T  33015069 acatttgataatttaaaatagtggactaggtggaggtggagtagatgttgtaggaggtggaggtgaacttggtgttgtcggtgttgcaggtggaggtgga 33015168  T
Q  119 cttggt 124  Q
    ||||||    
T  33015169 cttggt 33015174  T

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Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 33004091 - 33004193
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatcaccat 392  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  33004091 ccgggccatccaggaatgcccgaaataccaggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgtacttggatcgccat 33004190  T
Q  393 tct 395  Q
    |||    
T  33004191 tct 33004193  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 33015844 - 33015918
Alignment:
Q  314 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatca 388  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||    
T  33015844 ggaataccgggccatgttggtaggcctggaacaccgggaagtccaggtatattgaaacaatccgaacttgcatca 33015918  T

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Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 33004304 - 33004378
Alignment:
Q  314 ggaataccgggccatgttggtaggcctggaacaccgggaaatccaggtatattgaagcaatctgttcttgcatca 388  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||    
T  33004304 ggaataccgggccatgtcggtaggcctggaacaccgggaagtccaggtatattgaaacaatccgaacttgcatca 33004378  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 33004256 - 33004314
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccggg 351  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  33004256 ccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 33004314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 33015796 - 33015854
Alignment:
Q  293 ccgggccatcctggaatgccgggaataccgggccatgttggtaggcctggaacaccggg 351  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  33015796 ccgggccatcctggaatgcctggaataccgggccatgtcggtaggcctggaataccggg 33015854  T

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