View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_low_21 (Length: 392)
Name: NF21660_low_21
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_21 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 37 - 392
Target Start/End: Complemental strand, 24111297 - 24110934
Alignment:
| Q |
37 |
atagtataagatttgaagagaatttataagaagaaatattacccattataagaagagaagttgtcactttacaaattagttttgtatagataaattaatt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24111297 |
atagtataagatttgaagagaatttataagaagaaatattacccattataagaagagaagttgtcactttacaaattagttttgtatagataaattaatt |
24111198 |
T |
|
| Q |
137 |
agaccaaattcgtacttagataataaggatagtcataatttgaaacaagattaatgttacgaactcacaatcaattagaattaattgtatgaattaagct |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24111197 |
agaccaaattcgtacttagataataaggatagtcataatttgaaacaagattaatgttacgaactcacaatcaattagaattagttgtatgaattaagct |
24111098 |
T |
|
| Q |
237 |
aacttttcttatacacgtttagggtttaaattgtgaatg-gaagtttgagggagtgg-------tcataaatgacgaaaaatcacttatgatgttcttta |
328 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24111097 |
aacttttcttataaacatatagggtttaaattgtgaatgagaagtttgagggagtggtcataactcataaatgacaaaaaatcacttatgatgttcttta |
24110998 |
T |
|
| Q |
329 |
agttatatgtttgtataaaataatcgattcgttgagnnnnnnngttctacatagttcatcaaaa |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24110997 |
agttatatgtttgtataaaataatcgattcgttgagtttttttgttctacatagttcatcaaaa |
24110934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University