View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_22 (Length: 392)
Name: NF21660_low_22
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 37 - 275
Target Start/End: Complemental strand, 24111297 - 24111059
Alignment:
| Q |
37 |
atagtataagatttgaagagaatttataagaagaaatattacccattataagaagagaagttgtcactttacaaattagttttgtatagataaattaatt |
136 |
Q |
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| T |
24111297 |
atagtataagatttgaagagaatttataagaagaaatattacccattataagaagagaagttgtcactttacaaattagttttgtatagataaattaatt |
24111198 |
T |
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| Q |
137 |
agaccaaattcgtacttagataataaggatagtcataatttgaaacaagattaatgttacgaactcacaatcaattagaattaattgtatgaattaagct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24111197 |
agaccaaattcgtacttagataataaggatagtcataatttgaaacaagattaatgttacgaactcacaatcaattagaattagttgtatgaattaagct |
24111098 |
T |
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| Q |
237 |
aacttttcttatacacgtttagggtttaaattgtgaatg |
275 |
Q |
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||||||||||||| || | |||||||||||||||||||| |
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| T |
24111097 |
aacttttcttataaacatatagggtttaaattgtgaatg |
24111059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 24110852 - 24110958
Alignment:
| Q |
286 |
agatgcatacatgttagcatacctcataaactatataaaacttttttaacacaaatgttgaaagcgttcaatgttgcaaactttttgatgaactatgtag |
385 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
24110852 |
agatgcatacatgttagcatacctcataaactacataaaacttttttaacacaaatgttgaaagcgttcaatggtgcaaattttttgatgaactatgtag |
24110951 |
T |
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| Q |
386 |
aacaaaa |
392 |
Q |
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||||||| |
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| T |
24110952 |
aacaaaa |
24110958 |
T |
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