View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_24 (Length: 373)
Name: NF21660_low_24
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 8358761 - 8359106
Alignment:
| Q |
4 |
atgtccaagaatataacttgaaacaattttaggtgcagtgaatatcattttcttttctattatcaccaattctatgctacatcatttgaaaattacaaaa |
103 |
Q |
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| T |
8358761 |
atgtacaagaaaataacttgaaacaattttagatgcagtgaatatcattttcttttctattatcaccaattctatgctacatcatttgaaaattacaaaa |
8358860 |
T |
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| Q |
104 |
ctgagaatctctttcgcaaatttatgtattccctgatcatcaatcggggtaaaatacagtgcaacttgtataaatacagtgcgaccattaaatttgattg |
203 |
Q |
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| T |
8358861 |
ctgagaatctctttcgcaaatttatgtattccctgatcatcaattggggtaaaatac--------------------agtgcgaccattaaatttgattg |
8358940 |
T |
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| Q |
204 |
atcggat------------agatgataccttattacaaaatttgtcgtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttt |
291 |
Q |
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| T |
8358941 |
atcggataggcgaaccatgagatgataccttattacaaaatttgtcgtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttt |
8359040 |
T |
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| Q |
292 |
tctaccacaccaaatgcagtttttaatatcaa-nnnnnnnaggagtggtaaacaaaggatcataca |
356 |
Q |
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| T |
8359041 |
tctaccacaccaaatgcagtttttaatatcaattttttttaggagtggtaaacaaaggatcataca |
8359106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 8317213 - 8317128
Alignment:
| Q |
238 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
323 |
Q |
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| T |
8317213 |
gtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaa |
8317128 |
T |
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