View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21660_low_3 (Length: 632)

Name: NF21660_low_3
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21660_low_3
NF21660_low_3
[»] chr8 (1 HSPs)
chr8 (19-609)||(38347010-38347598)
[»] chr2 (3 HSPs)
chr2 (67-319)||(35136524-35136774)
chr2 (67-319)||(40326770-40327020)
chr2 (64-373)||(16321032-16321339)
[»] chr7 (2 HSPs)
chr7 (67-313)||(16771281-16771525)
chr7 (67-218)||(23209279-23209430)
[»] chr3 (5 HSPs)
chr3 (64-219)||(15474842-15474997)
chr3 (62-236)||(53609692-53609866)
chr3 (169-233)||(17719753-17719817)
chr3 (169-233)||(19020982-19021046)
chr3 (62-95)||(24729963-24729996)
[»] chr5 (1 HSPs)
chr5 (19-319)||(23943602-23943900)
[»] chr1 (1 HSPs)
chr1 (252-301)||(23464109-23464158)
[»] scaffold0214 (1 HSPs)
scaffold0214 (258-346)||(7739-7827)
[»] chr4 (1 HSPs)
chr4 (62-110)||(14290313-14290361)


Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Original strand, 38347010 - 38347598
Alignment:
Q  19 aacctatggacctacctgactaacatcagccacaacattactagcccgtggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaa 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38347010 aacctatggacccacctgactaacatcagccacaacattactagcccgtggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaa 38347109  T
Q  119 atggcatctttcatcgtaatagagtggccctcttatcaaactttatggacaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggca 218  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38347110 gtggcatctttcatcataatagagtggccctcttatcaaactttatggacaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggca 38347209  T
Q  219 ccgaaatcaaaatggcatattcgtattttgtctaaaacacttgatagaagtcttgctaatgttgattggcgcattactttcccagaagcatttgttgaag 318  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38347210 ccgaaatcaaaatggc--attcgtattctgtctaaaacacttgatagaagtcttgctaatgttgattggcgcattactttcccggaagcatttgttgaag 38347307  T
Q  319 tcctctgcaagctacattctgatcataacccccttctcctctgatttggcggtctttctttgggtagggg-cccagacccttctgtttttaggctgcctt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||| ||||| |||||||||     
T  38347308 tcctctgcaagctacattctgatcataacccccttctcctccgatttggcggtcttcctttggctaggggccccagacccttccgttttgaggctgcctg 38347407  T
Q  418 gattgatcacaatgactacgccgagttggttagccaatcctagaagtcctccaaccacaacaccatcgccgcatt-nnnnnnngtcaaagataactctat 516  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||        |||||||||||  ||||    
T  38347408 gattgatcacaatgactacgccgagttggttagccaatcctggaactcctccaaccacaacaccatcgtcgcattaaaaaaaagtcaaagataa--ctat 38347505  T
Q  517 tatcttcaataaagaaatcttcagaaacatttttcagagaaagaagaatgtggaaaacagactcaagggtgttcagaattacctggagcgcgt 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38347506 tatcttcaataaagaaatcttcagaaacatttttcagagaaagaagaatgtggaaaacagactcaagggtgttcagaattacctggagcgcgt 38347598  T

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Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 35136774 - 35136524
Alignment:
Q  67 tggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaactttatgg 166  Q
    |||||| | |||||||| ||||||||||||||| |||| ||||| ||||||  |||| |||| || | ||| || |  ||| |||| || ||||| |||     
T  35136774 tggatggtcattggtgactttaatgaaactctccttccaagtgatcaaagaggtggcgtcttccaccataacagggctgccatcttctctaacttcatga 35136675  T
Q  167 acaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatggcatattcgtattttgtctaaaacacttgataga 266  Q
        ||||||||||||||||||| |||| || ||||| || |||||||||||| ||||  | || |||||   |||||  | ||||| | ||||||||||    
T  35136674 ttgcttgcaaccttcttgatcttacaaccaccggtggacggtttacttggcacagaaacaataacggcatc--cgtatcatatctaagaaacttgataga 35136577  T
Q  267 agtcttgctaatgttgattggcgcattactttcccagaagcatttgttgaagt 319  Q
    ||| ||||||||||||||||||||||  ||||||| ||||| |||||||||||    
T  35136576 agtattgctaatgttgattggcgcatggctttccccgaagcttttgttgaagt 35136524  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 67 - 319
Target Start/End: Original strand, 40326770 - 40327020
Alignment:
Q  67 tggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaactttatgg 166  Q
    |||||||| |||||||| ||||||||||||||| |||| ||||| ||||||  |||| |||| || | ||| || |  ||| |||| || ||||| |||     
T  40326770 tggatgctcattggtgactttaatgaaactctccttccaagtgatcaaagaggtggcgtcttccaccataacagggctgccatcttctctaacttcatga 40326869  T
Q  167 acaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatggcatattcgtattttgtctaaaacacttgataga 266  Q
        ||||||||||||||||||| |||| || ||||| || |||||||||||| ||||  | |||| |||   |||||  | ||||| | ||||||||||    
T  40326870 ttgcttgcaaccttcttgatcttacaaccaccggtggacggtttacttggcacagaaacaataatgacatc--cgtatcatatctaagaaacttgataga 40326967  T
Q  267 agtcttgctaatgttgattggcgcattactttcccagaagcatttgttgaagt 319  Q
    ||| |||| |||||||||||||||||  ||||||| ||||| |||||||||||    
T  40326968 agtattgcaaatgttgattggcgcatggctttccccgaagcttttgttgaagt 40327020  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 373
Target Start/End: Original strand, 16321032 - 16321339
Alignment:
Q  64 ccgtggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaacttta 163  Q
    ||||||||||| || |||||||||||||||||||   | |||||||||||| ||  |||||  || ||||  |||||||  ||   ||| || || || |    
T  16321032 ccgtggatgctcataggtgattttaatgaaactcatctccctagtgaacaacgaggtggcacgttccatcacaatagagctgctaccttctctaatttca 16321131  T
Q  164 tggacaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatggcatattcgtattttgtctaaaacacttgat 263  Q
    || | || ||||| || ||||| ||  |||||||||||||||||||||| ||||||  |||  | ||||||||   |||||  | ||||| | ||| ||     
T  16321132 tgaataactgcaatctccttgacctaacaacaacaggtggtcgctttacatggcacaaaaacaataatggcatc--cgtatcctatctaagaaactcgac 16321229  T
Q  264 agaagtcttgctaatgttgattggcgcattactttcccagaagcatttgttgaagtcctctgcaagctacattctgatcataacccccttctcctctgat 363  Q
    ||| || | || |||||||| |||||  || | ||||| ||||| ||||||||||||||||| |   | ||||||||||||||||| || |||||| | |    
T  16321230 agaggtatggcgaatgttgactggcgtctttccttccctgaagcttttgttgaagtcctctgtagattgcattctgatcataaccctctcctcctccgtt 16321329  T
Q  364 ttggcggtct 373  Q
    ||||||||||    
T  16321330 ttggcggtct 16321339  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 67 - 313
Target Start/End: Complemental strand, 16771525 - 16771281
Alignment:
Q  67 tggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaactttatgg 166  Q
    ||||||||||||||||||||||||||||||||  | |||||||| ||||||   ||||| || || |  || ||||  || |  ||  |||  || ||||    
T  16771525 tggatgcttattggtgattttaatgaaactcttctacctagtgatcaaagagggggcattttccagcacaacagagcagctcaattcgcaactttcatgg 16771426  T
Q  167 acaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatggcatattcgtattttgtctaaaacacttgataga 266  Q
    |||| ||||| ||||||||  || || |||| |||||||| || ||||| || || ||||| |||||  |||| | ||| | || |||| ||||||||||    
T  16771425 acaaatgcaatcttcttgacattacagcaactggtggtcgtttcacttgccatcgcaatcataatgg--tattagaattctttccaaaaaacttgataga 16771328  T
Q  267 agtcttgctaatgttgattggcgcattactttcccagaagcatttgt 313  Q
     ||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  16771327 ggtctttctaatgttgattggcgcatttctttcccggaagcctttgt 16771281  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 23209430 - 23209279
Alignment:
Q  67 tggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaactttatgg 166  Q
    |||||||| || ||||| ||||||||||| ||  | ||||| |  ||||||  ||| || ||||||| ||||||||  || || || || |||||||||     
T  23209430 tggatgctcataggtgactttaatgaaacgcttctccctagcggccaaagaggtggaatttttcatcataatagagctgctcttttctctaactttatga 23209331  T
Q  167 acaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggca 218  Q
    | ||||||||||||||||| ||  ||||||| |||||||  || ||||||||    
T  23209330 ataattgcaaccttcttgacctcacaacaacgggtggtcatttcacttggca 23209279  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 15474997 - 15474842
Alignment:
Q  64 ccgtggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaacttta 163  Q
    ||||||||||| || |||||||||||||||||||   | |||||||||||| ||  |||||  || ||||  |||||||  |||   || |||||||| |    
T  15474997 ccgtggatgctcataggtgattttaatgaaactcatctccctagtgaacaacgaggtggcacgttccatcaaaatagagctgccacattctcaaacttca 15474898  T
Q  164 tggacaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcac 219  Q
    |  |  |||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  15474897 taaattattgcaacctccttgaccttacaacaacaggtggtcgctttacttggcac 15474842  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 53609866 - 53609692
Alignment:
Q  62 gcccgtggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaaatggcatctttcatcgtaatagagtggccctcttatcaaactt 161  Q
    |||| |||||| | |||||||| || |||||||||||  | || ||||| ||||||  ||| || ||| | |  |||||||  |||||||| ||||| ||    
T  53609866 gcccttggatgttaattggtgacttcaatgaaactcttctcccaagtgaccaaagaggtggaatatttaaccacaatagagctgccctcttctcaaattt 53609767  T
Q  162 tatggacaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatggcat 236  Q
     ||| | |||||||| |||||||||||  |||| || |||||||| ||||| ||||| || ||||| ||||||||    
T  53609766 catgaataattgcaatcttcttgatctcacaaccaccggtggtcggtttacctggcatcgcaatcataatggcat 53609692  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 17719817 - 17719753
Alignment:
Q  169 aattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatgg 233  Q
    |||||||| |||||||| ||| |||| ||||||||||| ||||||||||| || ||||| |||||    
T  17719817 aattgcaatcttcttgaccttacaaccacaggtggtcgttttacttggcatcgtaatcataatgg 17719753  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 19021046 - 19020982
Alignment:
Q  169 aattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggcaccgaaatcaaaatgg 233  Q
    |||||||| |||||||| ||| |||| ||||||||||| ||||||||||| || ||||| |||||    
T  19021046 aattgcaatcttcttgaccttacaaccacaggtggtcgttttacttggcatcgtaatcataatgg 19020982  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 24729963 - 24729996
Alignment:
Q  62 gcccgtggatgcttattggtgattttaatgaaac 95  Q
    |||| |||||||||||||||||||||||||||||    
T  24729963 gcccttggatgcttattggtgattttaatgaaac 24729996  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 23943602 - 23943900
Alignment:
Q  19 aacctatggacctacctgactaacatcagccacaacattactagcccgtggatgcttattggtgattttaatgaaactctcattcctagtgaacaaagaa 118  Q
    ||||| ||||||||||| || ||||||||| |||  || | || | | ||| |||| |||||||| || |||||||||||  |||||||||| ||||||     
T  23943602 aacctttggacctacctcacaaacatcagcaacactatcaataactcttggttgctaattggtgacttcaatgaaactcttcttcctagtgaccaaagag 23943701  T
Q  119 atggcatctttcatcgtaatagagtggccctcttatcaaactttatggacaattgcaaccttcttgatctttcaacaacaggtggtcgctttacttggca 218  Q
     ||  || ||| |||  ||| |||   || |||| || ||||| ||| |||||||||| || ||||| ||  |||| |||||||||||||||||||||||    
T  23943702 gtgaaatttttaatcacaatcgagcttccatcttctccaacttcatgaacaattgcaatctccttgacctcacaaccacaggtggtcgctttacttggca 23943801  T
Q  219 ccgaaatcaaaatggcatattcgtattttgtctaaaacacttgatagaagtcttgctaatgttgattggcgcattactttcccagaagcatttgttgaag 318  Q
     || ||||| |||||  ||| |  ||| | ||||| |  ||||| ||| | || |||||||| ||||||||| |  | ||||||||||| ||||||||||    
T  23943802 tcgtaatcagaatgg--tatccaaattctttctaagaagcttgacagagggctagctaatgtagattggcgcttatccttcccagaagcttttgttgaag 23943899  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 23464109 - 23464158
Alignment:
Q  252 aaaacacttgatagaagtcttgctaatgttgattggcgcattactttccc 301  Q
    |||| |||||||||| ||||| |||||||||||||||||||| |||||||    
T  23464109 aaaaaacttgatagaggtctttctaatgttgattggcgcatttctttccc 23464158  T

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Target: scaffold0214 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 7739 - 7827
Alignment:
Q  258 cttgatagaagtcttgctaatgttgattggcgcattactttcccagaagcatttgttgaagtcctctgcaagctacattctgatcataa 346  Q
    ||||||||| || | |||||||||| ||||||| || | ||||| || || ||||||||| |||| |||| ||| || |||||||||||    
T  7739 cttgatagaggtttagctaatgttggttggcgccttgccttccccgaggcttttgttgaaatcctttgcaggcttcactctgatcataa 7827  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 14290313 - 14290361
Alignment:
Q  62 gcccgtggatgcttattggtgattttaatgaaactctcattcctagtga 110  Q
    |||| |||||||| |||||||||||||| ||||| ||| ||||||||||    
T  14290313 gcccttggatgctcattggtgattttaacgaaaccctccttcctagtga 14290361  T

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