View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_30 (Length: 308)
Name: NF21660_low_30
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 111 - 300
Target Start/End: Original strand, 24110576 - 24110765
Alignment:
| Q |
111 |
gtatgacatttgccaaacatcatcaattctatcatttactacaaaattgcatcattgtacctatgaaatttgccaaactttatcaattaattggatcatt |
210 |
Q |
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| T |
24110576 |
gtatgacatttgccaaacatcatcaattctatcatttactacaaaattgcatcattgtacctatgaaatttgccaaactttatcaattaattggatcatt |
24110675 |
T |
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| Q |
211 |
tatgacaaacttacataaatgcaatcttttaagctttgtttgtattagattaaattagatatgtcttttaagtattagaaatagtgtcca |
300 |
Q |
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| T |
24110676 |
tatgacaaacttacataaatgcaatcttttaagctttgtttgtattagattaaattagatatgtcttttaagtattagaaatggtgtcca |
24110765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 24110489 - 24110367
Alignment:
| Q |
1 |
gagtggtgagtaaaaaatagccgttcaaagaagggagtggacnnnnnnn-tgctggcctaaaaagggcttgtttggtttggtggttcatgtacgattaag |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24110489 |
gagtggtgagtaaaaaatagccgttcaaagaagggagtggacaaaaaaaatgctggcctaaaaagggcttgtttggtttggtggttcatgtacgattaag |
24110390 |
T |
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| Q |
100 |
attttgtttgtgtatgacatttg |
122 |
Q |
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| T |
24110389 |
attttgtttgtgtatgacatttg |
24110367 |
T |
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