View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_low_36 (Length: 241)
Name: NF21660_low_36
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_36 |
 | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 10768867 - 10768949
Alignment:
| Q |
143 |
acaaataagaggggtaacatatcacaagattatcggaacaactgagtaaatttgcaatttgcaacgagatttcaggttacacc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10768867 |
acaaataagaggggtaacatatcacaagattatcggaacaactgagtaaatttgcaatttgcaatgagatttcaggttacacc |
10768949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12504724 - 12504776
Alignment:
| Q |
18 |
aattaattctattttccattcatacagggtggatctgggtatgcaagatatat |
70 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
12504724 |
aattatttctattttccatttttacagggtggatctgggtatgcaagaaatat |
12504776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 15753 - 15701
Alignment:
| Q |
18 |
aattaattctattttccattcatacagggtggatctgggtatgcaagatatat |
70 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
15753 |
aattatttctattttccatttttacagggtggatctgggtatgcaagaaatat |
15701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University