View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_39 (Length: 231)
Name: NF21660_low_39
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 44308809 - 44309010
Alignment:
| Q |
14 |
ttattcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttg |
113 |
Q |
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| T |
44308809 |
ttattcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttg |
44308908 |
T |
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| Q |
114 |
gtatatggttagtttgcttgacagactgatgaaaattgatgccaatataaaacgtgctctttaattcttattttctattcaactacagaactatcaaata |
213 |
Q |
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| T |
44308909 |
gtatatggttagtttgcttgacaggctgatgaaaattgatgccaatataaaacttgctctttaattcttattttctattcaactacagaactatcaaata |
44309008 |
T |
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| Q |
214 |
tt |
215 |
Q |
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|| |
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| T |
44309009 |
tt |
44309010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 44458334 - 44458135
Alignment:
| Q |
16 |
attcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44458334 |
attcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggt |
44458235 |
T |
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| Q |
116 |
atatggttagtttgcttgacagactgatgaaaattgatgccaatat-aaaacgtgctctttaattcttattttctattcaactacagaactatcaaatat |
214 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
44458234 |
atatggttagtttgcttgacaggctgatgagaattgatgccaatataaaaacttgctctttaattctcattttctattcaactgcagaactatcaaatat |
44458135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 44465867 - 44465668
Alignment:
| Q |
16 |
attcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465867 |
attcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggt |
44465768 |
T |
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| Q |
116 |
atatggttagtttgcttgacagactgatgaaaattgatgccaatat-aaaacgtgctctttaattcttattttctattcaactacagaactatcaaatat |
214 |
Q |
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| T |
44465767 |
atatggttagtttgcttgacaggctgatgagaattgatgccaatataaaaacttgctctttaattctcattttctattcaactgcagaactatcaaatat |
44465668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 27466930 - 27466739
Alignment:
| Q |
16 |
attcttaatatttagcgattgagattaattatgcgaaagttttgatttctcatttaaaaattgtgaattgcataagcctatgcttttagaattctttggt |
115 |
Q |
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|||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| |||||||||||||| |
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| T |
27466930 |
attctttatatttagggattgagatta----tgcgaaagttttgatttctcatgtaaaatttgtgaaatgcataagt-tatgcttctagaattctttggt |
27466836 |
T |
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| Q |
116 |
atatggt------tagtttgcttgacagactgatgaaaattgatgccaatataaaacgtgctctttaattcttattttctattcaactacagaacta |
206 |
Q |
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||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |
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| T |
27466835 |
atatggtaatggttagtttgcttgacgggttgatgaaaattgatgccaatataaaatgtgctctttaattgtcattttctattcaactacagaacta |
27466739 |
T |
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