View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_41 (Length: 219)
Name: NF21660_low_41
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13567739 - 13567536
Alignment:
| Q |
1 |
tgaggactaatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaatcaaataattatatggcactttggatcaga-g |
99 |
Q |
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| T |
13567739 |
tgaggactgatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaattgaataattatatggcac-ttggatcagagg |
13567641 |
T |
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| Q |
100 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctggagattgaacgatagaaagagttttttcatgaattggatg |
199 |
Q |
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| T |
13567640 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctacatattgaacgttagagggagtttttgcatgaattggatg |
13567541 |
T |
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| Q |
200 |
accat |
204 |
Q |
| |
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|||| |
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| T |
13567540 |
tccat |
13567536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44339317 - 44339160
Alignment:
| Q |
1 |
tgaggactaatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaatcaaataattatatggcactttggatcag-ag |
99 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || |
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| T |
44339317 |
tgaggactgatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaataaaattaaaatgaatcgaataattatatggcac-ttggatcagaag |
44339219 |
T |
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| Q |
100 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctg |
159 |
Q |
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| T |
44339218 |
gttaagattttgaggttggaaagggaagatattgaagaaggaataaag-cagagaagctg |
44339160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 31860084 - 31860181
Alignment:
| Q |
89 |
ttggatcagagg-ttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaagctggagattgaacgatagaaagagttttt |
185 |
Q |
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| T |
31860084 |
ttggatcagagggttaagattttgaggttggaaaggctagatattgaagaaggaatagagtcagagaagctgcagattgaacgttagagggagttttt |
31860181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 48806319 - 48806375
Alignment:
| Q |
100 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaag |
156 |
Q |
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| T |
48806319 |
gttaaggttttgaggttggaaagggaagagattgaagaaggaattgagccaaagaag |
48806375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 5061786 - 5061940
Alignment:
| Q |
1 |
tgaggactaatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaatgaaattaaaatgaatcaaataattatatggcactttggatcaga-g |
99 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||| | |
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| T |
5061786 |
tgaggactgatatgtgtaatctgtcccaaattgaatgtttaatttatgtacaacgaaattaaaatgaatcgaataattatatggcac-ttggattagagg |
5061884 |
T |
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| Q |
100 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaa |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5061885 |
gttaagattttgaggttggaaagggaagatattgaagaaggaatagagccagagaa |
5061940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 5072260 - 5072292
Alignment:
| Q |
50 |
acaatgaaattaaaatgaatcaaataattatat |
82 |
Q |
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| T |
5072260 |
acaatgaaattaaaatgaatcgaataattatat |
5072292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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