View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21660_low_5 (Length: 545)
Name: NF21660_low_5
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 235 - 526
Target Start/End: Complemental strand, 4134120 - 4133829
Alignment:
| Q |
235 |
aattgtgataattctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggtt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134120 |
aattgtgataattctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggtt |
4134021 |
T |
|
| Q |
335 |
gtgtgaggacagcaggaatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134020 |
gtgtgaggacagcaggaatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagt |
4133921 |
T |
|
| Q |
435 |
tcctgattttaatgagagatcagctggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatc |
526 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
4133920 |
tcctgattttaatgagagatcagctggtaatcaagataaatgtagaacagattgtttggtaaattgttcttgtttggcatatgcatatgatc |
4133829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 235 - 531
Target Start/End: Complemental strand, 4144922 - 4144629
Alignment:
| Q |
235 |
aattgtgataattctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggtt |
334 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||| |||||| ||||||| | | |||||||||||||||| |
|
|
| T |
4144922 |
aattgtgataattctagtgtaccaa---tttgtagttgttttgatgggtttcagccaaagaattcggtggagtggagtttaggaaattggactaatggtt |
4144826 |
T |
|
| Q |
335 |
gtgtgaggacagcaggaatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagt |
434 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||| |||||| ||||||||| | | |||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
4144825 |
gtgtgagaacagaaggattgaacttgaagtgtgagatggtgaagaatggatcaaatctagtgaaacaagatgcatttttggtgcatcataatatgaaacc |
4144726 |
T |
|
| Q |
435 |
tcctgattttaatgagagatcagctggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttct |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4144725 |
tcctgattttaatgagagatcagctggtaatcaagataaatgtggaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttct |
4144629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 235 - 529
Target Start/End: Complemental strand, 4163278 - 4162984
Alignment:
| Q |
235 |
aattgtgataattctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggtt |
334 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4163278 |
aattgtgatatttctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggagtggagttcaaggaattggactaatggtt |
4163179 |
T |
|
| Q |
335 |
gtgtgaggacagcaggaatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagt |
434 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |||||| ||||||| | | ||||||||||| ||||||||| ||| |||| |||| |
|
|
| T |
4163178 |
gtgtgaggaaagaaggaatgaacttgaagtgtgagatggtgaagaatggatcaagcgtagttaaacaagataaatttttggtgcatcccaatacgaaacc |
4163079 |
T |
|
| Q |
435 |
tcctgattttaatgagagatcagctggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatcctt |
529 |
Q |
| |
|
|||||||||| ||||||||||| || || || |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
4163078 |
tcctgattttgctgagagatcagatgttagtcgagataagtgtagaacagattgtttggcaaattgttcttgtttggcttatgcatatgatcctt |
4162984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 4134511 - 4134740
Alignment:
| Q |
19 |
tgtaactttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaa |
118 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
4134511 |
tgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttaga |
4134610 |
T |
|
| Q |
119 |
atcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaa |
218 |
Q |
| |
|
|||||||| |||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
4134611 |
atcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaa |
4134710 |
T |
|
| Q |
219 |
gatttccatctttgtgaattgtgataattc |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
4134711 |
gatttccatctttgtgaattgtgacaattc |
4134740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 4145313 - 4145542
Alignment:
| Q |
19 |
tgtaactttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaa |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
4145313 |
tgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttaga |
4145412 |
T |
|
| Q |
119 |
atcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaa |
218 |
Q |
| |
|
|||||||| |||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4145413 |
atcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaa |
4145512 |
T |
|
| Q |
219 |
gatttccatctttgtgaattgtgataattc |
248 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
4145513 |
gatttccatttttgtgaattgtgacaattc |
4145542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 4123970 - 4124189
Alignment:
| Q |
23 |
actttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatca |
122 |
Q |
| |
|
|||| ||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4123970 |
acttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatca |
4124069 |
T |
|
| Q |
123 |
agtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
4124070 |
agtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatt |
4124169 |
T |
|
| Q |
223 |
tccatctttgtgaattgtga |
242 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
4124170 |
tccatttttgtgaattgtga |
4124189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 4153320 - 4153545
Alignment:
| Q |
23 |
actttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatca |
122 |
Q |
| |
|
|||| ||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4153320 |
acttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatca |
4153419 |
T |
|
| Q |
123 |
agtttcctgaatcagcaagttgagctgttgaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||| || ||| |
|
|
| T |
4153420 |
agtttcctgaatcagcaagttgagctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatt |
4153519 |
T |
|
| Q |
223 |
tccatctttgtgaattgtgataattc |
248 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
4153520 |
tccatctttgtgaattgtgacaattc |
4153545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 238 - 531
Target Start/End: Complemental strand, 4152922 - 4152629
Alignment:
| Q |
238 |
tgtgataattctagtgtaccaaatatttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtg |
337 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||||||| | ||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
4152922 |
tgtgataattctactgtgccaa---tttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtg |
4152826 |
T |
|
| Q |
338 |
tgaggacagcaggaatgaacttgaagtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcc |
437 |
Q |
| |
|
|||||| || |||||||||||| |||||||||||| |||||| ||||||| | | ||||||||||||| ||| |||| ||| ||||||||| ||| |
|
|
| T |
4152825 |
tgaggaaagaaggaatgaacttaaagtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcc |
4152726 |
T |
|
| Q |
438 |
tgattttaatgagagatca---gctggtaatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttct |
531 |
Q |
| |
|
||||||||||| |||| || || | |||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4152725 |
tgattttaatgtgagaacaaataatgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
4152629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 262 - 531
Target Start/End: Complemental strand, 4123551 - 4123282
Alignment:
| Q |
262 |
atttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttga |
361 |
Q |
| |
|
||||||||||||||| | ||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
4123551 |
atttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattgaacttga |
4123452 |
T |
|
| Q |
362 |
agtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgagagatcagctgg |
461 |
Q |
| |
|
||||||||||| |||||| ||||||| || | |||| |||||||| ||| |||| ||| ||||||||||||||||||||| |||||||| | || |
|
|
| T |
4123451 |
agtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgattttgctgagagattaaatgt |
4123352 |
T |
|
| Q |
462 |
taatcaagataaatgtagaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttct |
531 |
Q |
| |
|
| || |||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4123351 |
tgatatagataagtgtggagaagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
4123282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 4163674 - 4163898
Alignment:
| Q |
24 |
ctttgttagatgcaatcttcatcgatggaacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaa |
123 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| || ||||||||| || || | |||||| |
|
|
| T |
4163674 |
ctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaa |
4163773 |
T |
|
| Q |
124 |
gtttcctgaatcagcaagttgagctgttgaatttgttga------agttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattaca |
217 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| |||| | |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
4163774 |
gtttcctacatcaacaagttgagctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattaca |
4163873 |
T |
|
| Q |
218 |
agatttccatctttgtgaattgtga |
242 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
4163874 |
agatttccatttttgtgaattgtga |
4163898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University