View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_6 (Length: 535)
Name: NF21660_low_6
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 218 - 521
Target Start/End: Complemental strand, 10253822 - 10253519
Alignment:
| Q |
218 |
gtgattaggctgacttgaattattttttgtggttattgcaaa-catagtgcctaaattgatacttttatatatctttgatcatgtggcagatttggtgca |
316 |
Q |
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| T |
10253822 |
gtgattaggctgacttgaattattttttgtggttattgcaaaacatagtgcctaaattgatacttttatatatctttgatcatgtggcatatttggtgca |
10253723 |
T |
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| Q |
317 |
aataaacaagttatatggggaagattggaccataaatagctctcactacaaaaataatgtgtatttcctaacaattttattgacaggtccaaccctgtcg |
416 |
Q |
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| T |
10253722 |
aataaacaagttatatggggaagattggaccataaatagctctcactacaaaaataatgtgtatttcctaactattttattgacaggtccaaccctgtag |
10253623 |
T |
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| Q |
417 |
acattaaaataaaataaaaactcctttacg----atcgatcatctctcagaagaaatgaaaatttgtcctgtggggttttcaacaacaactgccatgccc |
512 |
Q |
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| T |
10253622 |
acat-----taaaaaaaaaactcctttacgatcaatcaatcatctcttagaacaaatgaaaatttgtcctgtggggttttcaacaacaaccgccatgccc |
10253528 |
T |
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| Q |
513 |
gataaaatt |
521 |
Q |
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| T |
10253527 |
gataaaatt |
10253519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 10254036 - 10253903
Alignment:
| Q |
4 |
agagagaagaaattaggttcagatacctttattggagatgaagtattttattttatattatgtgttgtaccttcaatttttatgagaaaggggtcatgat |
103 |
Q |
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| T |
10254036 |
agagataagaaattaggttcagatgtctttattggagaggaagtattttattttatattctgtgttgtaccttcaatttttatgagaaatgggtcatgat |
10253937 |
T |
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| Q |
104 |
aatttagagttcggctaaaaggtaaataaaacct |
137 |
Q |
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| T |
10253936 |
aatttggagttcggctaaaaggtaaataaaacct |
10253903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 25481503 - 25481543
Alignment:
| Q |
94 |
gggtcatgataatttagagttcggctaaaaggtaaataaaa |
134 |
Q |
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| T |
25481503 |
gggtcatgataatctaaagttcggctaaaagataaataaaa |
25481543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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