View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21660_low_9 (Length: 493)
Name: NF21660_low_9
Description: NF21660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21660_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 30581462 - 30581092
Alignment:
| Q |
20 |
aatacccccaaaattaagagaggagaagacaatctatataattctcctttttgtcttaccattatcttagagtacaaaatcataaatgcaaagttcatgt |
119 |
Q |
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| T |
30581462 |
aatacctccaaaattaagagaggagaagacaatctatataattctcctttttgtcttaccattatcttagagtacaaaatcaaaaatacaaagttcatgt |
30581363 |
T |
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| Q |
120 |
taataggataagaaaaataaaattagtagatgctagtacaataacaaatgatatctcatagaatattctatcatatggttacatatctcctttgtaagaa |
219 |
Q |
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| T |
30581362 |
taataggataagaaatataaaattagtagatgctagtacaataacaaatgatatctcatagaatattctatcatatggttacatatctcctttgtaagaa |
30581263 |
T |
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| Q |
220 |
gttttcttactctcttggaactagtactcatagattctgggggtatttgttaatcaattcacatatgcgatttttgcaaataaaaacataaaacaagttc |
319 |
Q |
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| T |
30581262 |
gtttttttactctcttggaactagtactcatagattttgagggtatttgttaatcaattcacatatgcgatttttgcaaataaaaacataaaacaagttc |
30581163 |
T |
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| Q |
320 |
ccagtttgtggacaatcaatatcatttatacattcacctgtcgtaaagaaaaagataatataacaatatta |
390 |
Q |
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| T |
30581162 |
ccagtttgtggacaatcaatatcatttatacattcacctgtcgtaaagaaaaagataatataacaatatta |
30581092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 460 - 493
Target Start/End: Complemental strand, 30581022 - 30580989
Alignment:
| Q |
460 |
tgacttaccaccaacttctgttgtgacaataaac |
493 |
Q |
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| T |
30581022 |
tgacttaccaccaacttctgttgtgacaataaac |
30580989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 30805933 - 30805836
Alignment:
| Q |
21 |
atacccccaaaattaagagaggagaagacaatctatataattctcctttttgtcttaccattatcttagagtacaaaatcataaatgcaaagttcatg |
118 |
Q |
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||||| ||||||||||||||| | |||| ||| || ||| ||| || || |||||| || || ||||||||||||| ||||||||||| ||||||| |
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| T |
30805933 |
atacctccaaaattaagagagaataagataatataattaaaactctttgttttcttacgataatattagagtacaaaaccataaatgcaaggttcatg |
30805836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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