View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_high_10 (Length: 391)
Name: NF21661_high_10
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 27991860 - 27991488
Alignment:
| Q |
1 |
atttgattaagttttaatgttagggttcaatcactggcttttgttcaatttgggttatgttcagttttggnnnnnnncnnnnnnnga-ggttaggttaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | | |||||||||||| |
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| T |
27991860 |
atttgattaagttttaatgttagggttcaatcactggcttttgttcaatttgagttaagttcagttttggtttttttcaaaaaaaaaaggttaggttaat |
27991761 |
T |
|
| Q |
100 |
aagtgctcctttaagcaaggatcggatcaaaacttttacataccggtttggttcaatatcaatttggttcagttcgattcaannnnnnnnnnnnnngtgc |
199 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||| |||||||||||||||| || | |
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| T |
27991760 |
aagtgctcctttaagcaaggatcggatcaaagcttttacataccagttcggtttaatatcaattcggttcagttcgattcagtttttagtttttttgtcc |
27991661 |
T |
|
| Q |
200 |
acccctaatatgtataagagttcaatagaactcacaaaccaaagtatactgtgatcatgcactattttcaatttattttcccatccacaaaaattgtttt |
299 |
Q |
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| T |
27991660 |
tcccctaatatgtataagagttcaatagaactcacaaaccaaagtatactatgatcatgcactattttcaatttattttcccatccacaaaaattgtttt |
27991561 |
T |
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| Q |
300 |
ttagtagaatgcaagtaaccttttattatgcatatccaaatgtagatatctttttcgagtttgaagcactaat |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27991560 |
ttagtagaatgcaagtaaccttttattatgcatatccaaatgtagatatctttttcgagtttgaagcactaat |
27991488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 199 - 372
Target Start/End: Complemental strand, 28001708 - 28001538
Alignment:
| Q |
199 |
cacccctaatatgtataagagttcaatagaactcacaaaccaaagtatactgtgatcatgcactattttcaatttattttcccatccacaaaaattgttt |
298 |
Q |
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|||||||||| |||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28001708 |
cacccctaatttgtatatgagttcggtagaactcgcaaaccaaagtatactatgatcatgcactattttcaatttattttcccatccacaaaaattgatt |
28001609 |
T |
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| Q |
299 |
tttagtagaatgcaagtaaccttttattatgcatatccaaatgtagatatctttttcgagtttgaagcactaat |
372 |
Q |
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| || ||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
28001608 |
t---gttgaatgcaagtaactttttattgtgcatatccatatgtagatatctttatcgagtttgaagcactaat |
28001538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 24004184 - 24004008
Alignment:
| Q |
1 |
atttgattaagttttaatgttagggttcaatcactggcttttgttcaatttgggttatgttcagttttggnnnnnnncnnnnnnngaggttaggttaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||| | ||||| |||||||| |
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| T |
24004184 |
atttgattaagttttaatgttagggttcaatcactgttttttgttcaacttggattaagttcagttttggtttttttcaaaaa---aggttcggttaata |
24004088 |
T |
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| Q |
101 |
agtgctcctttaagcaaggatcggatcaaaacttttacataccggtttggttcaatatcaatttggttcagttcgattca |
180 |
Q |
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| || || ||||| | ||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||| |
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| T |
24004087 |
actggtcgtttaaatatggatcggttcaaaacttttacatgccggttcggttcaatatcaattcggttcagttcggttca |
24004008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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