View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21661_high_11 (Length: 325)

Name: NF21661_high_11
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21661_high_11
NF21661_high_11
[»] chr8 (9 HSPs)
chr8 (5-296)||(5947735-5948026)
chr8 (5-296)||(5983345-5983627)
chr8 (5-296)||(5958803-5959109)
chr8 (5-150)||(5920140-5920285)
chr8 (223-294)||(5920367-5920441)
chr8 (223-294)||(5886166-5886240)
chr8 (227-289)||(5886605-5886667)
chr8 (223-294)||(5841847-5841921)
chr8 (223-294)||(5848557-5848631)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 5947735 - 5948026
Alignment:
Q  5 aggctttgatgattgactaattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatt 104  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947735 aggctttgatgattggctaattcaggcacagtagcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatt 5947834  T
Q  105 tgttaagtggggtcgtatcactttttgaaaattgattttcttgattaactgggttgagatgaagggctacaccgtcttcatatggaaaaggatcagatat 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947835 tgttaagtggggtcgtatcactttttaaaaattgattttcttgattaactgggttgagatgaagggctacaccgtcttcatatggaaaaggatcagatat 5947934  T
Q  205 tggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgat 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947935 tggttgtactatattttgtggtattggattttgaatgagagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgat 5948026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 5983345 - 5983627
Alignment:
Q  5 aggctttgatgattgactaattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5983345 aggctttgatgattgactaattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatt 5983444  T
Q  105 tgttaagtggggtcgtatcactttttgaaaattgattttcttgattaactgggttgagatgaagggctacaccgtcttcatatggaaaaggatcagatat 204  Q
    ||||||||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5983445 tgttaagtggggtcgtatcactttttgaatattga---------ttaactgggttgagatgaagggctacaccgtcttcatatggaaaaggatcagatat 5983535  T
Q  205 tggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5983536 tggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgat 5983627  T

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Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 5958803 - 5959109
Alignment:
Q  5 aggctttgatgattgactaattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatt 104  Q
    ||||||||||||||  |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5958803 aggctttgatgattttctaattcaggcacagtttcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatt 5958902  T
Q  105 tgttaagtggggtcgtatcactttttgaaaattgattttcttgattaactgggttgagatgaagggctacaccg---------------tcttcatatgg 189  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||||| ||||||| |               |||||||| |     
T  5958903 tgttaagcggggtcgtgtcactttttgaaaattgattttcttgatttagtgggttaagatgaagagctacactgtctattgaccatgtatcttcataagt 5959002  T
Q  190 aaaaggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatca 289  Q
    | || ||| ||||||||||||||| ||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5959003 agaaagattagatattggttgtacaatattttgtgccatcggattttgaatgtgaaggaaattggcattataatggtcattgatgtctacctttgtatca 5959102  T
Q  290 atttgat 296  Q
    |||||||    
T  5959103 atttgat 5959109  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 5920140 - 5920285
Alignment:
Q  5 aggctttgatgattgactaattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatt 104  Q
    |||||||||| ||||||||||| ||||| ||| || ||||||||||||||||||||| ||||| |||||||||  ||||||||||||||||| |||| ||    
T  5920140 aggctttgatcattgactaatttaggcagagtggcttcaagttcaaccaaatcatgacattgaacatattgttccattaattcaattgggttgattattt 5920239  T
Q  105 tgttaagtggggtcgtatcactttttgaaaattgattttcttgatt 150  Q
    |||| |||||||| |||||||||||||| | |||||||||||||||    
T  5920240 tgttgagtggggtggtatcactttttgagatttgattttcttgatt 5920285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 5920367 - 5920441
Alignment:
Q  223 tggtattggattttgaatgtgagggaaattggcattataatggtcattg---atgtctacctttgtatcaatttg 294  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||||   |||||||||||||||||||||||    
T  5920367 tggtattggattttgaatgtgaaggaaattgccattataatggttattgatcatgtctacctttgtatcaatttg 5920441  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 5886166 - 5886240
Alignment:
Q  223 tggtattggattttgaatgtgagggaaattggcattataatggtcattg---atgtctacctttgtatcaatttg 294  Q
    ||||||| |||| | ||||| | ||||||||| ||||||||||| ||||   |||||||||||||||||||||||    
T  5886166 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttg 5886240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 5886605 - 5886667
Alignment:
Q  227 attggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatca 289  Q
    |||||||||||| || | ||||| ||||||||  ||| || ||||||||||||||||||||||    
T  5886605 attggattttgattgggtgggaacttggcattgaaattgttattgatgtctacctttgtatca 5886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 5841847 - 5841921
Alignment:
Q  223 tggtattggattttgaatgtgagggaaattggcattataatggtcattg---atgtctacctttgtatcaatttg 294  Q
    ||||||| |||| | ||||| | ||||||||| ||||||||||| ||||   |||||||| ||||||||||||||    
T  5841847 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttg 5841921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 5848557 - 5848631
Alignment:
Q  223 tggtattggattttgaatgtgagggaaattggcattataatggtcattg---atgtctacctttgtatcaatttg 294  Q
    ||||||| |||| | ||||| | ||||||||| ||||||||||| ||||   |||||||| ||||||||||||||    
T  5848557 tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttg 5848631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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