View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_high_17 (Length: 287)
Name: NF21661_high_17
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_high_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 8018866 - 8018597
Alignment:
| Q |
18 |
aaaaaacttatccttctttcacaagttgtttaaggttaaaaaacacatgaatgtatataggtaaacctaattgtacatagaaccctttaagcaacaaaaa |
117 |
Q |
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| T |
8018866 |
aaaaaacttatccttctttcacaagtttgttaaggttaaaaaacacatgaatgtatataggtaaacctaattgtacatagaaccctttaagcaacaaaaa |
8018767 |
T |
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| Q |
118 |
tgtactagtagtagtcattctttcaacaaaaacaaacaacaatatattaatgggaagtgataaacaaggtttgtataaaatatatttcaccatacttaaa |
217 |
Q |
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| T |
8018766 |
tgtactagtagtagtcattctttcaacaaaaacaaacaacaatatattaatgggaagtgataaacaaggtttgtataaaatatatttcaccatacttaaa |
8018667 |
T |
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| Q |
218 |
ataggttaatattaaccnnnnnnnntactcctacctcttctcttgaattaaatgcatgagtgtgataaat |
287 |
Q |
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| T |
8018666 |
ataggttaatattaaccaaaaaaaatactcctacctcttctcttgaattaaatgcatgagtgtgataaat |
8018597 |
T |
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