View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21661_high_4 (Length: 676)

Name: NF21661_high_4
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21661_high_4
NF21661_high_4
[»] chr1 (1 HSPs)
chr1 (45-676)||(12454562-12455196)


Alignment Details
Target: chr1 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 45 - 676
Target Start/End: Original strand, 12454562 - 12455196
Alignment:
Q  45 atttaatatgtttttggaaagtttgaagaatagtatattcacatgtagcctcaataagaaatttgtttgaattgatattgtaattagagagtttcttttc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12454562 atttaatatgtttttggaaagtttgaagaatagtatattcacatgtagcctcaataagaaatttgtttgaattgatattgtaattagagagtttcttttc 12454661  T
Q  145 ccacctggttcggattatattatccgaaatgttctagggcgcacgacaagnnnnnnnnn-tcccttgttgtaattattatgaagctgctgagttttatat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||          || |||||||||||||||||||||||||||||||||||||    
T  12454662 ccacctggttcggattatattatccgaaatgttctagggcgcatgacaagaaaaaaaaaatctcttgttgtaattattatgaagctgctgagttttatat 12454761  T
Q  244 ttgtatctatgttgaaaattacaaatagtactgaaaattgagatgtaatttgtattaagtgtatcattcaatgattgtttagggaacaatagttaaatga 343  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12454762 ttgtatctatgttgaaaattacaaatagtactgaaaattgaaaggtgatttgtattaagtgtatcattcaatgattgtttagggaacaatagttaaatga 12454861  T
Q  344 aaagaagtactagttcatgaaaaaacaccttcaatcatgtaagaacacatcatattaagttgaatctcaaattcatgaagacaccttttgaagtgttttc 443  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12454862 aaagatgtactagttcatgaaaaaacaccttcaatcatgtaagaacacatcatattaatttgaatctcaaattcatgaagacaccttttgaagtgttttc 12454961  T
Q  444 tttgatttcatttattttgtaaatttctcaaaatggaacatac--atgatcagtagtgattgataacacttgattttgagatcagtatttcctctaattg 541  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12454962 tttgatttcatttattttgtaaatttctcaaaatggaacatacatatgaccagtagtgattgataacacttgattttgagttcagtatttcctctaattg 12455061  T
Q  542 aaatagaccagttttaagggtatttctaaattaaacaagatctggagctagcatgcttcttacattagggtgtacatgtgcatgaggctcagggattctg 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12455062 aaatagaccagttttaagggtatttctaaattaaacaagatctggagctagcatgcttcttacattagggtgtacatgtgcatgaggctcagggattctg 12455161  T
Q  642 gtgagggtaggtgcacagagccttagtttccaagc 676  Q
    |||||||||||||||||||||||||||||||||||    
T  12455162 gtgagggtaggtgcacagagccttagtttccaagc 12455196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University