View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_high_6 (Length: 597)
Name: NF21661_high_6
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 136 - 581
Target Start/End: Original strand, 27643560 - 27644005
Alignment:
| Q |
136 |
aaatggtgacatatggcagcatatactgctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagaggatcgatgtatcgagt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27643560 |
aaatggtgacatatggcagcatatactgctagcttcattagcacgttgtgtgcactccttggtgacatacctattatgatagatgatcgatgtatcgagt |
27643659 |
T |
|
| Q |
236 |
atgtaaccgaaggggcataggatgtaactagatcctcaagcacgtaatagaaatttgggtaagggagtcgtggcatattctcatgaaaaggtggttcgtg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643660 |
atgtaaccgaaggggcataggatgtaactagatcctcaagcacgtaatagaaatttgggtaagggagtcgtggcatattctcatgaaaaggtggttcgtg |
27643759 |
T |
|
| Q |
336 |
gcatataagtttggtggaccgaaccggatcatgaaccggacccatgtaatgtttggttccggtttggagtgttatatggatgagagaggaagatggagaa |
435 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643760 |
gcatataagtttggtggacagaactggatcatgaaccggacccatgtaatgtttggttccggtttggagtgttatatggatgagagaggaagatggagaa |
27643859 |
T |
|
| Q |
436 |
gatttgaggacagtgagaacattaagaagcatggttttgttaacggtgatgttaacttcttcgtcacctacaaactggaatgtgacccagaagaggtggg |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27643860 |
gatttgaggacagtgagaacattaagaagcatggttttgttaacggtgatgttagcttcttcgtcacctacaaactggaatgtgacccagaagaggtggg |
27643959 |
T |
|
| Q |
536 |
tgatttcttgggctatgggtaataacttggtatgtgtgtcagctga |
581 |
Q |
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| T |
27643960 |
tgacttcttggactagtggtaacagcttgtcatgtgtgtcagctga |
27644005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 175 - 581
Target Start/End: Complemental strand, 50254429 - 50254023
Alignment:
| Q |
175 |
agcacgttgtgtgcactccttggtgacatacctattatgatagaggatcgatgtatcgagtatgtaaccgaaggggcataggatgtaactagatcctcaa |
274 |
Q |
| |
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|||| ||||| |||||| ||||| || |||||||||||||||||| |||||||| |||||||||| ||||| ||||||||| |||| |||||||||| |
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| T |
50254429 |
agcatgttgtatgcacttcttggcgaagcacctattatgatagaggaacgatgtattgagtatgtaattgaaggtgcataggatttaacgagatcctcaa |
50254330 |
T |
|
| Q |
275 |
gcacgtaatagaaatttgggtaagggagtcgtggcatattctcatgaaaaggtggttcgtggcatataagtttggtggaccgaaccggatcatgaaccgg |
374 |
Q |
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| T |
50254329 |
gcgcgtaatagaaatttggataagagagtcgaggcatattctcttcgaaaggtggttcgtggcagataagtttggtagactgaaccgggtcatgcactgg |
50254230 |
T |
|
| Q |
375 |
acccatgtaatgtttggttccggtttggagtgttatatggatgagagaggaagatggagaagatttgaggacagtgagaacattaagaagcatggttttg |
474 |
Q |
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||||| ||| ||||||||||| ||||| | |||||||||| |||||| ||||| ||| ||||||| |||||||||||||| ||||||||||||| |||| |
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| T |
50254229 |
acccaagtagtgtttggttcctgtttgtactgttatatgggtgagaggcgaagacggataagattttaggacagtgagaacgttaagaagcatggatttg |
50254130 |
T |
|
| Q |
475 |
ttaacggtgatgttaacttcttcgtcacctacaaactggaatgtgacccagaagaggtgggtgatttcttgggctatgggtaataacttggtatgtgtgt |
574 |
Q |
| |
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|||||| |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||| ||| | ||||| ||||||| ||||| |||||| |
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| T |
50254129 |
ttaacgctgatcttaacttcttcgtctgctacaagctggaatgtgacccagaataggtgggtgacttcgttagctataggtaatagcttggcgcgtgtgt |
50254030 |
T |
|
| Q |
575 |
cagctga |
581 |
Q |
| |
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||||||| |
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| T |
50254029 |
cagctga |
50254023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 208 - 581
Target Start/End: Complemental strand, 50247259 - 50246886
Alignment:
| Q |
208 |
attatgatagaggatcgatgtatcgagtatgtaaccgaaggggcataggatgtaactagatcctcaagcacgtaatagaaatttgggtaagggagtcgtg |
307 |
Q |
| |
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||||||| ||||||||||||||| |||||||||| |||||| | || |||| ||| ||||||||||| ||| ||||||||||||||||||||||| | |
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| T |
50247259 |
attatgagagaggatcgatgtattgagtatgtaatcgaaggtgtgtatgatgcaacgagatcctcaagtgtgtagtagaaatttgggtaagggagtcgag |
50247160 |
T |
|
| Q |
308 |
gcatattctcatgaaaaggtggttcgtggcatataagtttggtggaccgaaccggatcatgaaccggacccatgtaatgtttggttccggtttggagtgt |
407 |
Q |
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|||||||||| | |||||||||||||||||||||||||||| | ||||| || || |||| | |||||||||||||||||| ||||||||||||| || |
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| T |
50247159 |
gcatattctcgttaaaaggtggttcgtggcatataagtttgttagaccggacggggtcatatatcggacccatgtaatgtttagttccggtttggaccgt |
50247060 |
T |
|
| Q |
408 |
tatatggatgagagaggaagatggagaagatttgaggacagtgagaacattaagaagcatggttttgttaacggtgatgttaacttcttcgtcacctaca |
507 |
Q |
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| T |
50247059 |
tatatgggtgagaggagaagatggagaagatttaagaacggtgacaacgttatggagcatggatttgttaacagtgatgttaacttcttcatcttctaca |
50246960 |
T |
|
| Q |
508 |
aactggaatgtgacccagaagaggtgggtgatttcttgggctatgggtaataacttggtatgtgtgtcagctga |
581 |
Q |
| |
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|||||||| || |||||||||| |||||||| ||| | |||||| ||||||| |||| |||||||||||||| |
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| T |
50246959 |
aactggaaagtcacccagaagatgtgggtgacttcattggctataggtaatagtttggcgtgtgtgtcagctga |
50246886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 27643539 - 27643413
Alignment:
| Q |
18 |
caggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27643539 |
caggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcgtgcttgcaaaacaacatgtgtgggctgcagttacagaagatgcgaagaa |
27643440 |
T |
|
| Q |
118 |
ccaagcgttcaattgcacaaatggtga |
144 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
27643439 |
ccaagctttcaattgcacaaatggtga |
27643413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 50254500 - 50254616
Alignment:
| Q |
29 |
tacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||| ||||||||||||||| | | | |||||||||||||| | |
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| T |
50254500 |
tacacttgggagcatttctgtgatatgacggatgctcgtgtgctggcaaagcaacatgtatgggctgcagttacaaagaaggctaagaaccaagcgttta |
50254599 |
T |
|
| Q |
129 |
attgcacaaatggtgac |
145 |
Q |
| |
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||||||||||||||||| |
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| T |
50254600 |
attgcacaaatggtgac |
50254616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 50247352 - 50247481
Alignment:
| Q |
18 |
caggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaa |
117 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||| | ||||| || |||| ||||| |||||||||||||||| ||||||| | | | ||||| |
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|
| T |
50247352 |
caggaaatagatacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagcaacatgtgtgggctggagttacaaagaaagctaagaa |
50247451 |
T |
|
| Q |
118 |
ccaagcgttcaattgcacaaatggtgacat |
147 |
Q |
| |
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|||||| || ||||| ||||| |||||||| |
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|
| T |
50247452 |
ccaagcatttaattgtacaaacggtgacat |
50247481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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