View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21661_high_7 (Length: 496)
Name: NF21661_high_7
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Original strand, 8018131 - 8018586
Alignment:
| Q |
6 |
agtagcaaaggtaaagcattcaaagaaagaatgaaaaagtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaag |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018131 |
agtagaaaaggtaaagcattcaaagaaagaatgaaaaggtaaatgtatgcatttgaagaagaaaaactagcataatagtatcatcagatcacttttgaag |
8018230 |
T |
|
| Q |
106 |
aaggttcaaaagtgagtgagtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018231 |
aaggttcaaaagtgagtgagtggggactattgcagtaatagctgtatgtagagagagagggtcccactgatcgagcattaacaatgagcgtaactaccac |
8018330 |
T |
|
| Q |
206 |
atttacactcatcaaatgcacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactatn |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018331 |
atttacactcatcaaatgcacttcacattctttcactacttttttgacaatacaagctagtttcacacgagtcacgcgtgtgagagacagcaatactata |
8018430 |
T |
|
| Q |
306 |
nnnnnnngacatgtttgtgcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatgg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018431 |
aaaaaaagacatgtttgtgcgtgttgaaaaggtttgtgttttgtgttgttggcgctaactcatttggcagttggttagatggagacatttattactatgg |
8018530 |
T |
|
| Q |
406 |
tcagttttttggatatgtttttattttggaagttcaatagaggtgttactcctacc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018531 |
tcagttttttggatatgtttttattttggaagttcaatagaggtgttactcctacc |
8018586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 8018641 - 8018597
Alignment:
| Q |
452 |
tactcctacctcttctcttgaattaaatgcatgagtgtgataaat |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018641 |
tactcctacctcttctcttgaattaaatgcatgagtgtgataaat |
8018597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University