View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_high_8 (Length: 413)
Name: NF21661_high_8
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 24190832 - 24190458
Alignment:
| Q |
20 |
aacagtcactatcttgatagaatccatattttcacatccaagatacttcagaagagaaacactatttcgagaaatttgagaattatcaggcttcacattc |
119 |
Q |
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| T |
24190832 |
aacagtcactatcttgatggaatccatattttcacatccaagatacttcagaagagaaacactatttcgagaaatttgagaattatcaggcttcacattc |
24190733 |
T |
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| Q |
120 |
aaatcatctgagataagaaaagttgcggtcaccggaacaaaaccattcttagcaggttttttaaccgcacataaattggttcttttcttttcacagcagt |
219 |
Q |
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| T |
24190732 |
aaatcatctgagataagaaaagttgcggtcaccggaacaaaaccattcttagcaggttttttaaccgcacataaattggttcttttcttttcacagcagt |
24190633 |
T |
|
| Q |
220 |
ggcagtttcgcttcttaggtacattgatgcacttttggttgctgctgcaattaaaaaacctcaatttttctgtgtcatcaatgttgagttttagatactt |
319 |
Q |
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| T |
24190632 |
ggcagtttcgcttcttaggtacattgatgcacttttggttgctgctgcaattaaaaaacctcaatttttctgtgtcatcaatgttgagttttagatactt |
24190533 |
T |
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| Q |
320 |
gcaatattcttccatggaattaattggtcgaaccaataattctttttcaaaagctgacctaaaattatctttgtc |
394 |
Q |
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| T |
24190532 |
gcaatattcttccatcgaattaattggtcgaaccaataattctttttcaaaagctgacctaaaattatctttgtc |
24190458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 24198070 - 24197698
Alignment:
| Q |
21 |
acagtcactatcttgatagaatccatattttcacatccaagatacttcagaagaga--aacactatttcgagaaatttgagaattatcaggcttcacatt |
118 |
Q |
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| T |
24198070 |
acagtcactatcttgatagtatctatgttttcacatccaagatacttgagtagagagaaatactattttgagaaagttgagaattatcaggcttcacatt |
24197971 |
T |
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| Q |
119 |
caaatcatctgagataagaaaagttgcggtcaccggaacaaaaccattcttagcaggttttttaaccgcacataaattggttcttttcttttcacagcag |
218 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||| | | | ||||||| ||||||| ||||||||||||||| ||||| |
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| T |
24197970 |
caaatcatctgagataagaaaagttgctgttgccggaacaaaaccattcttaggatggtgtttaaccacacataacgaggttcttttcttttcgcagcac |
24197871 |
T |
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| Q |
219 |
tggcagtttcgcttcttaggtacattgatgcacttttggttgctgctgcaattaaaaaacctcaatttttctgtgtcatcaatgttgagttttagatact |
318 |
Q |
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| T |
24197870 |
ttgcaatttcgcttcgcagggttatcaatgcactcttgtt---tgccacaattaaaagacctcaatttttctgtgtcatcaatgttgagttttagatatt |
24197774 |
T |
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| Q |
319 |
tgcaatattcttccatggaattaattggtcgaaccaataattctttttcaaaagctgacctaaaattatctttgtc |
394 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||| || || |||||||| |
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| T |
24197773 |
tgcaatatcggtccattgaattaatcggtcgaaccaataattctttttcaatagctgacctgaatttctctttgtc |
24197698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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