View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_high_9 (Length: 396)
Name: NF21661_high_9
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 6149112 - 6148916
Alignment:
| Q |
17 |
taatactttaacaaaatttattttaattaagggtttgcctaacttaactcgtacctttgttcttatctcgttctacttggaaagaaaatatgtaaaaagg |
116 |
Q |
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| T |
6149112 |
taatactttaacaaaatttattttaattaagggtttgtctaacttaactcgtacctttgttcttatctcgttctacttagaaagaaaaaatgtaaaaagg |
6149013 |
T |
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| Q |
117 |
aaatttaaatagacaaaatatttttagggctttaacttcgcaccccacatacacccttctgttttcctctaagtatattatgttcaaggtttgtttg |
213 |
Q |
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| T |
6149012 |
aaatttaaatagacaaaatatttttagggctttaacttcacaccccacatacacccttctgttttcctctaagtatattatgttcaaggtttgtttg |
6148916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 259 - 379
Target Start/End: Complemental strand, 6148870 - 6148750
Alignment:
| Q |
259 |
gacaaaagtattcacttctacatacacatatacaccacaacccaaaagccaaagccaatccatctctaaggttggactctgttaagttttcccattgttt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6148870 |
gacaaaagtattcacttctacatacacatatacaccacaacccaaaagccaaagccaatccatctctaaggttggactctgttaagttttcccattgttt |
6148771 |
T |
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| Q |
359 |
attattccattttctcattct |
379 |
Q |
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||||||||||||||||||||| |
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| T |
6148770 |
attattccattttctcattct |
6148750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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