View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21661_low_1 (Length: 796)
Name: NF21661_low_1
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_low_1 |
 | |
|
| [»] scaffold0458 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 740; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 18 - 792
Target Start/End: Complemental strand, 44488760 - 44487975
Alignment:
| Q |
18 |
gcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488760 |
gcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatgcacattcactaaggcaattttataaagaatgcgacatttatg |
44488661 |
T |
|
| Q |
118 |
gaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488660 |
gaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccgc |
44488561 |
T |
|
| Q |
218 |
tcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488560 |
tcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaaa |
44488461 |
T |
|
| Q |
318 |
acttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttttttggaaaatttgattgaccaagctggttggtccatttggagtg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488460 |
acttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttttttggaaaatttgattgaccaagctggttggtccatttggagtg |
44488361 |
T |
|
| Q |
418 |
gtgattttgcactctctacgttgtattatgcagagtttgataatagaggacctggtgcagacacttctaatagagttacatggccagggtaccatgtgat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488360 |
gtgattttgcactctctacgttgtattatgcagagtttgataatagaggacctggtgcagacacttctaatagagttacatggccagggtaccatgtgat |
44488261 |
T |
|
| Q |
518 |
taatgctacagatgcttcaaattttacggttgataattttctgcaggggaatgtttggttgcctcaaatgggagttccttatattcgtgaacttacaact |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488260 |
taatgctacagatgcttcaaattttacggttgacaattttctgcaggggaatgtttggttgcctcaaatgggagttccttatattcgtgaacttacaact |
44488161 |
T |
|
| Q |
618 |
tttaattagagaacacaagaggaacgatgaataaaggactacata-----------ttgatgctgattgaagaccaaaattatttgatatatttattctt |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488160 |
tttaattagagaacacaagaggaacgatgaataaaggactacatattgaggattaattgatgctgattgaagaccaaaattatttgatatatttattctt |
44488061 |
T |
|
| Q |
707 |
tgctgttgtttttaatatacttcaaaagtttttcaaaaggaagagctgcaggttttatttggtgggtgttctgcttcctttgctac |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488060 |
tgctgttgtttttaatatacttcaaaagtttttcaaaaggaagagctgcaggttttatttggtgggtgttctgcttcctttgctac |
44487975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 44463988 - 44463886
Alignment:
| Q |
40 |
gttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttatggaacaatagattttatatttgg |
139 |
Q |
| |
|
||||||| || ||||||||||||||||| | || |||||||||||||| ||||| || | |||||| ||||||||||||||| ||||||| ||||| || |
|
|
| T |
44463988 |
gttgcagtttcgaagggtaccaagacacgttatacacacattcactaagacaattctacagagaatgtgacatttatggaacagtagatttcatattcgg |
44463889 |
T |
|
| Q |
140 |
aaa |
142 |
Q |
| |
|
||| |
|
|
| T |
44463888 |
aaa |
44463886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 352
Target Start/End: Complemental strand, 44474562 - 44474252
Alignment:
| Q |
42 |
tgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttatggaacaatagattttatatttggaa |
141 |
Q |
| |
|
|||||||| ||||| || ||||| ||| | || |||||||| | |||||||||||| ||||| ||||| ||||||||| | || || |||||||||| |
|
|
| T |
44474562 |
tgcagcttcgaaggctatcaagatactttgtacacacattccatgaggcaattttatcgcgaatgtgacatctatggaacagttgacttcatatttggaa |
44474463 |
T |
|
| Q |
142 |
acgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttaca-tggacaattcaatcccatcaccgctcaaggacgcactgatccaaacc |
240 |
Q |
| |
|
| || || |||||||| ||| ||||| |||||||| || |||||| ||| |||||||||||| | || ||||||||||| || || |||||||| | |
|
|
| T |
44474462 |
atgctgctgttgttttacaatcttgcaacatatatccccgacttccc-aacagtggacaattcaacgctataaccgctcaaggccgaacggatccaaatc |
44474364 |
T |
|
| Q |
241 |
aaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaaaacttaccttgggaggccatggaa |
340 |
Q |
| |
|
|||||||||| | ||| || || ||| ||| | ||| | |||| ||||| ||||| || |||| |||||||| |||||||| ||||||||||| |
|
|
| T |
44474363 |
aaaacacaggaacttctatacataatgcaactataaaagctactgatgatttggctccgttgattggtacagtgaaaacataccttggtaggccatggaa |
44474264 |
T |
|
| Q |
341 |
agagtattcaag |
352 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
44474263 |
agagtactcaag |
44474252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 5e-46; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 24061237 - 24060899
Alignment:
| Q |
17 |
agcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttat |
116 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| || ||||| | ||||||||||| |||||||| |||||| ||||||||| || || |
|
|
| T |
24061237 |
agcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagttttatcgagaatgcgatatatac |
24061138 |
T |
|
| Q |
117 |
ggaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccg |
216 |
Q |
| |
|
|||||| | || || ||||||||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||||||||||| ||||||| | |
|
|
| T |
24061137 |
ggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaagtggacaattcaattccatcacag |
24061038 |
T |
|
| Q |
217 |
ctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaa |
316 |
Q |
| |
|
||||||| || ||||||||||| |||||||| || | ||| || || ||| ||| |||||||||| || ||||| ||||| | ||| ||||| || |
|
|
| T |
24061037 |
ctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaaccagcagatgatttggctcctaacgttgcaactgttaa |
24060938 |
T |
|
| Q |
317 |
aacttaccttgggaggccatggaaagagtattcaagaac |
355 |
Q |
| |
|
||| ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
24060937 |
aacatacctagggagaccatggaaagaatattcaagaac |
24060899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 39450890 - 39451246
Alignment:
| Q |
17 |
agcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttat |
116 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| || ||||| | ||||||||||| |||||||| |||||| ||||||||| || || |
|
|
| T |
39450890 |
agcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagttttatcgagaatgcgatatatac |
39450989 |
T |
|
| Q |
117 |
ggaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccg |
216 |
Q |
| |
|
|||||| | || || ||||||||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||||||||||| ||||||| | |
|
|
| T |
39450990 |
ggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaagtggacaattcaattccatcacag |
39451089 |
T |
|
| Q |
217 |
ctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaa |
316 |
Q |
| |
|
||||||| || ||||||||||| |||||||| || | ||| || || ||| ||| ||||| |||| || ||||| ||||| | ||| | ||||| | |
|
|
| T |
39451090 |
ctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttggctccgaaagttggaactgtaca |
39451189 |
T |
|
| Q |
317 |
aacttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttt |
373 |
Q |
| |
|
||| ||||||||||| || |||||||| ||||| || || ||| ||||||| ||||| |
|
|
| T |
39451190 |
aacataccttgggagaccgtggaaagaatattcgaggacagtttttatgcaatcttt |
39451246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 39460277 - 39460633
Alignment:
| Q |
17 |
agcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttat |
116 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| || ||||| | ||||||||||| |||||||| |||||| ||||||||| || || |
|
|
| T |
39460277 |
agcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagttttatcgagaatgcgatatatac |
39460376 |
T |
|
| Q |
117 |
ggaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccg |
216 |
Q |
| |
|
|||||| | || || ||||||||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||||||||||| ||||||| | |
|
|
| T |
39460377 |
ggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaagtggacaattcaattccatcacag |
39460476 |
T |
|
| Q |
217 |
ctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaa |
316 |
Q |
| |
|
||||||| || ||||||||||| |||||||| || | ||| || || ||| ||| ||||| |||| || ||||| ||||| | ||| | ||||| | |
|
|
| T |
39460477 |
ctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttggctccgaaagttggaactgtaca |
39460576 |
T |
|
| Q |
317 |
aacttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttt |
373 |
Q |
| |
|
||| ||||||||||| || |||||||| ||||| || || ||| ||||||| ||||| |
|
|
| T |
39460577 |
aacataccttgggagaccgtggaaagaatattcgaggacagtttttatgcaatcttt |
39460633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 39471762 - 39472118
Alignment:
| Q |
17 |
agcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttat |
116 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| || ||||| | ||||||||||| |||||||| |||||| ||||||||| || || |
|
|
| T |
39471762 |
agcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagttttatcgagaatgcgatatatac |
39471861 |
T |
|
| Q |
117 |
ggaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccg |
216 |
Q |
| |
|
|||||| | || || ||||||||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||||||||||| ||||||| | |
|
|
| T |
39471862 |
ggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaagtggacaattcaattccatcacag |
39471961 |
T |
|
| Q |
217 |
ctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaa |
316 |
Q |
| |
|
||||||| || ||||||||||| |||||||| || | ||| || || ||| ||| ||||| |||| || ||||| ||||| | ||| | ||||| | |
|
|
| T |
39471962 |
ctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttggctccgaaagttggaactgtaca |
39472061 |
T |
|
| Q |
317 |
aacttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttt |
373 |
Q |
| |
|
||| ||||| ||||| || |||||||| ||||| || || ||| ||||||| ||||| |
|
|
| T |
39472062 |
aacatacctagggagaccgtggaaagaatattcgaggacagtttttatgcaatcttt |
39472118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 37165458 - 37165364
Alignment:
| Q |
45 |
agctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttatggaacaatagattttatatttgg |
139 |
Q |
| |
|
||||||||||| ||||||||||| || || ||||||| || | ||||| || ||| | |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37165458 |
agctttgaaggttaccaagacacactatacgcacattcccttcgacaattctacaaaaactgcgacatttatggaacagtagatttcatatttgg |
37165364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 745296 - 745235
Alignment:
| Q |
102 |
gaatgcgacatttatggaacaatagattttatatttggaaacgccgcagttgttttgcaaaa |
163 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
745296 |
gaatgcaacatttatggcacggtagattttatatttggaaatgctgcagtagtttttcaaaa |
745235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 12772 - 12416
Alignment:
| Q |
17 |
agcagatatgtccagtttctatcgttgcagctttgaagggtaccaagacactctctatacacattcactaaggcaattttataaagaatgcgacatttat |
116 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| || ||||| | ||||||||||| |||||||| |||||| ||||||||| || || |
|
|
| T |
12772 |
agcagatatgtccaccttctatagttgtagctttgaagggtatcaggacacattgtatacacattctctaaggcagttttatcgagaatgcgatatatac |
12673 |
T |
|
| Q |
117 |
ggaacaatagattttatatttggaaacgccgcagttgttttgcaaaactgcaatatatatcctcgtcttcccttacatggacaattcaatcccatcaccg |
216 |
Q |
| |
|
|||||| | || || ||||||||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||||||||||| ||||||| | |
|
|
| T |
12672 |
ggaacagttgacttcatatttggaaatggtgcagttgttttgcaaaattgtaacatttatcctcgccttccgctaagtggacaattcaattccatcacag |
12573 |
T |
|
| Q |
217 |
ctcaaggacgcactgatccaaaccaaaacacaggcatttccattcacaattgcactgttaaaccagctgaagatttagctccaagtgttagtactgtgaa |
316 |
Q |
| |
|
||||||| || ||||||||||| |||||||| || | ||| || || ||| ||| ||||| |||| || ||||| ||||| | ||| | ||||| | |
|
|
| T |
12572 |
ctcaaggtcgaactgatccaaatcaaaacactggaacttctatacaaaatgcaactattaaagcagcagatgatttggctccgaaagttggaactgtaca |
12473 |
T |
|
| Q |
317 |
aacttaccttgggaggccatggaaagagtattcaagaactgttgttatgcagtcttt |
373 |
Q |
| |
|
||| ||||||||||| || |||||||| ||||| || || ||| ||||||| ||||| |
|
|
| T |
12472 |
aacataccttgggagaccgtggaaagaatattcgaggacagtttttatgcaatcttt |
12416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 19476547 - 19476596
Alignment:
| Q |
102 |
gaatgcgacatttatggaacaatagattttatatttggaaacgccgcagt |
151 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
19476547 |
gaatgcgacatttacgggacaatagatttcatatttggtaacgccgcagt |
19476596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University