View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21661_low_12 (Length: 308)
Name: NF21661_low_12
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 16237153 - 16237429
Alignment:
| Q |
17 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtgga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
16237153 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagtatcgcggggtgtgga |
16237252 |
T |
|
| Q |
117 |
ggacttatcagaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttt--ttgcagagctatggggagttttggaag |
214 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16237253 |
ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag |
16237352 |
T |
|
| Q |
215 |
gtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16237353 |
gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattatt |
16237429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 161025 - 161093
Alignment:
| Q |
56 |
tgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtggaggacttat |
124 |
Q |
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||||||||||||||| |||||||||| | || |||||||| |||||||| |||||||||||||||||| |
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| T |
161025 |
tgggtgggtcaagattaatactgacgatgtttataaggatgatagtatcgcggggtgtggaggacttat |
161093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 32714199 - 32714168
Alignment:
| Q |
17 |
gagacatttggaggaagtgggatggaaggaac |
48 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
32714199 |
gagacatttggaggaagtgggatggaaggaac |
32714168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 28575291 - 28575015
Alignment:
| Q |
17 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtgga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
28575291 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagtatcgcggggtgtgga |
28575192 |
T |
|
| Q |
117 |
ggacttatcagaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttt--ttgcagagctatggggagttttggaag |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28575191 |
ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag |
28575092 |
T |
|
| Q |
215 |
gtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28575091 |
gtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattatt |
28575015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 38658365 - 38658303
Alignment:
| Q |
206 |
ttttggaaggtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggatt |
268 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| | ||||| |||||| | ||||||| |
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|
| T |
38658365 |
ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggatt |
38658303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 20633483 - 20633207
Alignment:
| Q |
17 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtgga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
20633483 |
gagacatttggaggaagtgggatggaaggaaccagcgattaggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgcggggtgtgga |
20633384 |
T |
|
| Q |
117 |
ggacttatcagaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttt--ttgcagagctatggggagttttggaag |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20633383 |
ggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag |
20633284 |
T |
|
| Q |
215 |
gtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
20633283 |
gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattatt |
20633207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 48823513 - 48823238
Alignment:
| Q |
18 |
agacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtggag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48823513 |
agacatttagaggaagtgggatggaaggaaccagcgattggatgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgcggggtgtggag |
48823414 |
T |
|
| Q |
118 |
gacttatcagaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttt--ttgcagagctatggggagttttggaagg |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
48823413 |
gacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagagtgatgcttttattgcagagctatggggagttttggaagg |
48823314 |
T |
|
| Q |
216 |
tctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
48823313 |
tctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattctttggtggttgtgaatattatt |
48823238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 120 - 291
Target Start/End: Complemental strand, 38833478 - 38833305
Alignment:
| Q |
120 |
cttatcagaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgctttt--tgcagagctatggggagttttggaaggtc |
217 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38833478 |
cttattagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtc |
38833379 |
T |
|
| Q |
218 |
tccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
38833378 |
tccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattatt |
38833305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 38835977 - 38835871
Alignment:
| Q |
17 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggggtgtgga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |
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| T |
38835977 |
gagacatttggaggaagtgggatggaaggaaccactgattgcgtgggtcaagatcaatactaacgaagcttgtaaggatggtagtatcgcggggtgtgga |
38835878 |
T |
|
| Q |
117 |
ggactta |
123 |
Q |
| |
|
||||||| |
|
|
| T |
38835877 |
ggactta |
38835871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 18185400 - 18185494
Alignment:
| Q |
197 |
tatggggagttttggaaggtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
18185400 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattatt |
18185494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 18568588 - 18568852
Alignment:
| Q |
17 |
gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgtggg-gtgtgg |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||| | ||| | |||| |
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|
| T |
18568588 |
gagacatttggcggaagtgggatggaaggtaccaccaattgggtgggtcaagatcaatactaacgatgcttgtaaggatggtaatattgcgggagcgtgg |
18568687 |
T |
|
| Q |
116 |
aggacttatcagaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttt--ttgcagagctatggggagttttggaa |
213 |
Q |
| |
|
| | ||||| ||||||| | ||||||| ||||||| |||||||| ||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| |
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|
| T |
18568688 |
atggcttattagaggtttgaaaggcgaatggttagtggggttcttcaaatttttggggaagtgtagcgcttttgttgcggagctatgggaagttttggaa |
18568787 |
T |
|
| Q |
214 |
ggtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggtt |
279 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
18568788 |
ggtct-cgatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtggtt |
18568852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 39180666 - 39180760
Alignment:
| Q |
197 |
tatggggagttttggaaggtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgggaatattatt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
39180666 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattatt |
39180760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 14137690 - 14137756
Alignment:
| Q |
202 |
ggagttttggaaggtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggatt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||| | | | ||||||||| | |||||||| ||||||||| |
|
|
| T |
14137690 |
ggagttttggaaggtctccggtgtgcaagaagattaaggttcactgtaatagaattatatgtggatt |
14137756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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