View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_low_14 (Length: 290)
Name: NF21661_low_14
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 12455174 - 12455409
Alignment:
| Q |
30 |
gcacagagccttagtttccaagcagagagcccgtttacaagatttgaacatgcgacctacgaagcacatacatggacacggacacggatacatattcgac |
129 |
Q |
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| T |
12455174 |
gcacagagccttagtttccaagcagagagcccgtttacaagatttgaacatgcgacctacgaagcacatacatggacacggacccggatacatattcgac |
12455273 |
T |
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| Q |
130 |
atcggaaaactcctaatccgaggagtatttgtgcttcatagtctagcacgcttcttacattattgtaaaaagttatagacagggcgtatagccaaaactg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455274 |
atcggaaaactcctaatccgaggagtatttgtgcttcatagtctagcacgcttcttacattattgtaaaaagttatagacagggcgtatagccaaaactg |
12455373 |
T |
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| Q |
230 |
tggttgaatgtgaattggtctgctgataaccttcat |
265 |
Q |
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| T |
12455374 |
tggttgaatgtgaattggtctgctgataaccttcat |
12455409 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 5654557 - 5654501
Alignment:
| Q |
116 |
gatacatattcgacatcggaaaactcctaatccgaggagtatttgtgcttcatagtc |
172 |
Q |
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| T |
5654557 |
gatacgtatccgacaccggaatacgcctaatccgaagagtatttgtgcttcatagtc |
5654501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 30621782 - 30621753
Alignment:
| Q |
141 |
cctaatccgaggagtatttgtgcttcatag |
170 |
Q |
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| T |
30621782 |
cctaatccgaggagtatttgtgcttcatag |
30621753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 21211381 - 21211415
Alignment:
| Q |
138 |
actcctaatccgaggagtatttgtgcttcatagtc |
172 |
Q |
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| T |
21211381 |
actcctaatccgaggagtgtttgtgcttcatagtc |
21211415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Original strand, 47132184 - 47132212
Alignment:
| Q |
141 |
cctaatccgaggagtatttgtgcttcata |
169 |
Q |
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| T |
47132184 |
cctaatccgaggagtatttgtgcttcata |
47132212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 11596427 - 11596398
Alignment:
| Q |
141 |
cctaatccgaggagtatttgtgcttcatag |
170 |
Q |
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| T |
11596427 |
cctaatccgaggagtatttgtgcttcatag |
11596398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 38134383 - 38134335
Alignment:
| Q |
122 |
tattcgacatcggaaaactcctaatccgaggagtatttgtgcttcatag |
170 |
Q |
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||||||||||||| | || ||||||||||||||| | |||||||||||| |
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| T |
38134383 |
tattcgacatcgggacacgcctaatccgaggagtgtatgtgcttcatag |
38134335 |
T |
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