View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_low_15 (Length: 289)
Name: NF21661_low_15
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 27836956 - 27837208
Alignment:
| Q |
20 |
ataccatataccaataccatatgcaacttgcaaaatttactatattatttgccttaaagcaaataagtcatttacattgttaatttannnnnnnnaggaa |
119 |
Q |
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| T |
27836956 |
ataccatataccaataccatatgcaacttgcaaaatttactatattatttaccttaaagcaaataagtcatttacactgttaatttattttttttaggaa |
27837055 |
T |
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| Q |
120 |
aattttgatttgcctcctctaaagtaaatcgagtaaagtgaaaaaaccaaatataaataatgtttcattatactaacgatttgttatgcatgtgcatata |
219 |
Q |
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| T |
27837056 |
aattttgatttgcctcctctaaagtaaatcgagtaaagtgaaaaaaccaaatataaataatgtttcattatactaacgatttgttatgcatgtgcatata |
27837155 |
T |
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| Q |
220 |
atatcaactacgaatccatttatcaatagttaagagagaagtgttatggacac |
272 |
Q |
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| T |
27837156 |
atatcaactacgaatccatttatcaatagttaagagagaagtgttatgaacac |
27837208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 35257331 - 35257365
Alignment:
| Q |
195 |
acgatttgttatgcatgtgcatataatatcaacta |
229 |
Q |
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| T |
35257331 |
acgatttgttatgcatgtgcatataatatcaacta |
35257365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 42731654 - 42731683
Alignment:
| Q |
198 |
atttgttatgcatgtgcatataatatcaac |
227 |
Q |
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| T |
42731654 |
atttgttatgcatgtgcatataatatcaac |
42731683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 1550450 - 1550480
Alignment:
| Q |
197 |
gatttgttatgcatgtgcatataatatcaac |
227 |
Q |
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| T |
1550450 |
gatttgttatgcatgtgcatataatatcaac |
1550480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 15252232 - 15252198
Alignment:
| Q |
195 |
acgatttgttatgcatgtgcatataatatcaacta |
229 |
Q |
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| T |
15252232 |
acgatttgttatgcatgtccatataatatcaacta |
15252198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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