View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_low_20 (Length: 234)
Name: NF21661_low_20
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_low_20 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 4255687 - 4255901
Alignment:
| Q |
19 |
attcctgcaatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4255687 |
attcctgcaatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaat |
4255786 |
T |
|
| Q |
119 |
gttgacaattgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
4255787 |
gttgacaattgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagc-tttcgatatccgaacgagatatttcaaata |
4255885 |
T |
|
| Q |
219 |
accctctaaatgaatc |
234 |
Q |
| |
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|||||||||||||||| |
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| T |
4255886 |
accctctaaatgaatc |
4255901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 4260786 - 4260571
Alignment:
| Q |
19 |
attcctgcaatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaat |
118 |
Q |
| |
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|||||||||||||||||| |||||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4260786 |
attcctgcaatcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaat |
4260687 |
T |
|
| Q |
119 |
gttgacaattgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaata |
218 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
4260686 |
gttgacaagtgaagatttttattctcagtcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccaaacgagataattgaaata |
4260587 |
T |
|
| Q |
219 |
accctctaaatgaatc |
234 |
Q |
| |
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|||||||||||||||| |
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| T |
4260586 |
accctctaaatgaatc |
4260571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 4266325 - 4266117
Alignment:
| Q |
26 |
caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca |
125 |
Q |
| |
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||||| ||||| ||| |||||| |||||| ||||||||||||| || | ||||| ||| |||||| |||||||||| |||||| | ||||| ||||||| |
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| T |
4266325 |
caatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
4266226 |
T |
|
| Q |
126 |
attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
4266225 |
ggtgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatattcgaacgagataattgaaataaccctct |
4266126 |
T |
|
| Q |
226 |
aaatgaatc |
234 |
Q |
| |
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||||||||| |
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| T |
4266125 |
aaatgaatc |
4266117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 4289398 - 4289606
Alignment:
| Q |
26 |
caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca |
125 |
Q |
| |
|
||||| ||||| ||| |||||| |||||| ||||||||||||| || ||||||| ||| |||||| |||||||||| |||||| | ||||| ||||||| |
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| T |
4289398 |
caatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgctttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
4289497 |
T |
|
| Q |
126 |
attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct |
225 |
Q |
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|
||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
4289498 |
ggtgaagattttttttctcgttcctattacccttttgttttgacactacaaattccttaagcttttcgatatccaaacgagataattgaaataatcctct |
4289597 |
T |
|
| Q |
226 |
aaatgaatc |
234 |
Q |
| |
|
||||||||| |
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| T |
4289598 |
aaatgaatc |
4289606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 4297993 - 4298190
Alignment:
| Q |
26 |
caatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca |
125 |
Q |
| |
|
||||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
4297993 |
caatcgatattcaaacccatcacaacatttttgttctcaattttctcggctttcattctacataccaat-----------agatagtacaaatgttgaca |
4298081 |
T |
|
| Q |
126 |
attgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaataaccctct |
225 |
Q |
| |
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| |||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4298082 |
aatgaagacttttattctcgttcctagtaccctcttgttttaacactacaaattccttaagctttttgatatccgaacgagataattgaaataaccctct |
4298181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 4284690 - 4284907
Alignment:
| Q |
17 |
caattcctgcaatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaa |
116 |
Q |
| |
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||||||| ||||| ||||| ||| |||||| |||||| ||||||||||||| | ||||||||||| ||||| | |||||||| || ||| | |||| |
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| T |
4284690 |
caattccgacaatcaatattcaaagccatcagagcatttttgttctcaatttctttagctttcattctgtatacccaggcataagctatggatacaacaa |
4284789 |
T |
|
| Q |
117 |
atgttgacaattgaagatttttattctcattcctagtacccttttgttttgacactacaaattccttaagcttttcgatatccgaacgagatatttgaaa |
216 |
Q |
| |
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| |||||||| ||||| | ||| ||||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||| |||||||| |||||| |
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| T |
4284790 |
aagttgacaagtgaaggtattttttctcattcctagtagccttttgttttgacactaaaaattccttaagctatacgatatccaaacgagatcattgaaa |
4284889 |
T |
|
| Q |
217 |
taaccctctaaatgaatc |
234 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
4284890 |
taaccctctaaatgaatc |
4284907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 4258320 - 4258388
Alignment:
| Q |
56 |
ttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgac |
124 |
Q |
| |
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|||||||||| ||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4258320 |
ttgttctcaagtttttctgctttcagtctacataccaatgcataagcaatagataccacaaatgttgac |
4258388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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