View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21661_low_21 (Length: 227)
Name: NF21661_low_21
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21661_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 12515461 - 12515252
Alignment:
| Q |
1 |
tatatatattaaacattagattcatacatatcaattttgattataggattattttaatttcaactaaggtactagtattaaaactataaataaataattt |
100 |
Q |
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| T |
12515461 |
tatatatattaaacattagattcatacagatcaattttgattataggattattttaatttcaactaaggtactagtattaaaactataaataaataattt |
12515362 |
T |
|
| Q |
101 |
tcatacctgtccaagatgaaaataatattgctacacttagatacacaaaatccaatgagtactgcaaaattgaaaacaactagataaataatattgcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12515361 |
tcatacctgtccaagatgaaaataatattgctacacttagatacacaaaatccaatgagtactgcaaaattgaaaacaactagataaataatattgcaga |
12515262 |
T |
|
| Q |
201 |
tgaaattaat |
210 |
Q |
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|||||||||| |
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| T |
12515261 |
tgaaattaat |
12515252 |
T |
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