View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21661_low_5 (Length: 620)

Name: NF21661_low_5
Description: NF21661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21661_low_5
NF21661_low_5
[»] chr6 (8 HSPs)
chr6 (197-475)||(34957096-34957366)
chr6 (197-527)||(7672899-7673237)
chr6 (197-536)||(7656309-7656655)
chr6 (361-536)||(12591226-12591402)
chr6 (332-448)||(1569663-1569778)
chr6 (462-535)||(629808-629881)
chr6 (205-306)||(24026066-24026169)
chr6 (462-535)||(2197003-2197076)
[»] chr2 (3 HSPs)
chr2 (256-535)||(18457662-18457946)
chr2 (484-536)||(29076026-29076078)
chr2 (361-535)||(43881958-43882132)
[»] scaffold0604 (1 HSPs)
scaffold0604 (357-477)||(7284-7404)
[»] chr5 (4 HSPs)
chr5 (328-431)||(11240882-11240985)
chr5 (462-536)||(13579007-13579081)
chr5 (205-306)||(22278857-22278960)
chr5 (460-536)||(22292770-22292846)
[»] chr3 (2 HSPs)
chr3 (461-535)||(31893429-31893503)
chr3 (150-189)||(1114746-1114785)
[»] chr8 (7 HSPs)
chr8 (328-414)||(129991-130077)
chr8 (361-444)||(45482965-45483048)
chr8 (536-609)||(15190275-15190347)
chr8 (489-531)||(23475897-23475939)
chr8 (489-535)||(41708415-41708461)
chr8 (470-535)||(9866132-9866197)
chr8 (479-535)||(32057265-32057321)
[»] chr7 (6 HSPs)
chr7 (332-448)||(15746533-15746648)
chr7 (462-539)||(13926122-13926199)
chr7 (473-536)||(38656870-38656933)
chr7 (329-474)||(44212757-44212903)
chr7 (205-306)||(17335401-17335504)
chr7 (479-535)||(13931841-13931897)
[»] chr4 (6 HSPs)
chr4 (461-535)||(43259800-43259874)
chr4 (360-535)||(47335965-47336141)
chr4 (21-66)||(18181988-18182033)
chr4 (147-189)||(18181854-18181896)
chr4 (496-536)||(47326275-47326315)
chr4 (496-536)||(47341071-47341111)
[»] chr1 (5 HSPs)
chr1 (329-415)||(48735013-48735099)
chr1 (489-535)||(28032875-28032921)
chr1 (489-535)||(48734910-48734956)
chr1 (489-535)||(10460578-10460624)
chr1 (149-189)||(15389517-15389557)
[»] scaffold0477 (1 HSPs)
scaffold0477 (147-189)||(10867-10909)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-66)||(246149-246194)
[»] scaffold1603 (1 HSPs)
scaffold1603 (489-535)||(286-332)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 197 - 475
Target Start/End: Complemental strand, 34957366 - 34957096
Alignment:
Q  197 atggtaagtaacaatttctgaaaatctgaactttaatggagagtgttgtattttcatggtgcttctatgtgagattcaagtgaaggaagagggaaaagga 296  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||    
T  34957366 atggtgagtaacaatttctgaaaatctaaactttaatggagagtgttgtattttcatggtgctcc---gtgagattcaagtgaaggaagagggaaaagga 34957270  T
Q  297 gactgaagtgaggttaaggatgtgtagtgttagtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatact 396  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||    
T  34957269 gattgaagtgaggttaaggatgtgtagtgttagtgtgaattgctactctgctttttcagattt-gaaggtgtattcagcaaaaacaataaaaccaatact 34957171  T
Q  397 ttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgtcc 475  Q
    |    || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34957170 t----tttaaatatggttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacttgtcc 34957096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 197 - 527
Target Start/End: Original strand, 7672899 - 7673237
Alignment:
Q  197 atggtaagtaacaatttctgaaaatctgaactttaatggagagtgttgtattttcatggtgcttctatgtgagattcaagtgaaggaagagggaaaagga 296  Q
    ||||| ||||||||||||||||||||||||| | |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7672899 atggtgagtaacaatttctgaaaatctgaacatcaatggagaggcttgtattttcatggtgctcctatgtgagattcaagtgaaggaagagggaaaagga 7672998  T
Q  297 gactgaagtgaggttaaggatgtgtagtg--------ttagtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaa 388  Q
     ||||||||||| || | |||| |  |||        ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  7672999 aactgaagtgagattcatgatgaggggtgacatgttgttagtgtgaattgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaa 7673098  T
Q  389 ccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgtccttcaatgtacaag 488  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||   | | |    |    
T  7673099 ccaatattttctattaaaatatgtttcattttattattgatttaattttagtaggtaatcaaaccccaccaaaaccgccacctatccaaaattttgtggg 7673198  T
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaa 527  Q
    ||| || ||||||||||||||| ||||||||||||||||    
T  7673199 ttgggcatggtgcacaaatcttatatttgtgcattctaa 7673237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 197 - 536
Target Start/End: Complemental strand, 7656655 - 7656309
Alignment:
Q  197 atggtaagtaacaatttctgaaaatctgaactttaatggagagtgttgtattttcatggtgcttctatgtgagattcaagtgaaggaagagggaaaagga 296  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7656655 atggtgagtaacaatttctgaaaatctgaactccaatggagagtcttgcatttccatggtgcttctatgtgagattcaagtgaaggaagagggaaaagga 7656556  T
Q  297 gactgaagtgaggttaaggatgtgtagtg--------ttagtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaa 388  Q
    || ||||||||| || | |||| |  |||        |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  7656555 gaatgaagtgagattcatgatgaggggtgacgtgttgttagtgtgaattgctactttgcattttcagatttgaggggtgtattaagcaaaaacaataaaa 7656456  T
Q  389 ccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgtccttcaatgtacaag 488  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| || |||||||| |||||||||||   | | |    |    
T  7656455 ccaatattttctattaaaatatgtttcattttattatttatttaattttagtaggtaa-ccaaacctaccaaaactgccacctgtccagaattttctggg 7656357  T
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    ||| || ||||||||||||||| |||||||||||||||||||||||||    
T  7656356 ttgcgcatggtgcacaaatcttatatttgtgcattctaaatgccacca 7656309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 361 - 536
Target Start/End: Complemental strand, 12591402 - 12591226
Alignment:
Q  361 gggggtgtattcagcaaaaacaataaaaccaa-tactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccacca 459  Q
    |||||||||| ||||||||||||||||||||| || |||  |||| |||||||||| |||||||||| ||||| ||| ||||||| | || |||||||||    
T  12591402 gggggtgtatccagcaaaaacaataaaaccaaatatttttcattataatatgtttccttttattatttatttattttcagcaggtcaccccaccccacca 12591303  T
Q  460 aaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    |||| ||||||||||| | || ||     |||||| |||||||||||| ||| ||||||||||  ||||||||||||    
T  12591302 aaactgccacctgtccataaaagtgttgtttgtgcatggtgcacaaattttgcatttgtgcatattaaatgccacca 12591226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 1569778 - 1569663
Alignment:
Q  332 tgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatg-tttcattttattattgatt 430  Q
    |||||||||  ||||||||||||| ||  |||||||| | ||||||||||||||||||||||| ||||||||| |||||| |||| |||||||| |||||    
T  1569778 tgaattgctgttctgcattttcagttt--gggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttccttttattaatgatt 1569681  T
Q  431 taattttagcaggtaatc 448  Q
    || ||| |||||||||||    
T  1569680 tattttcagcaggtaatc 1569663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 629881 - 629808
Alignment:
Q  462 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    ||||||| ||||||||| ||| | || |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  629881 accgccagctgtccttccatggaaaaattgtgcatggtgcacaaatcttgtatttgtgcattctaaatggcacc 629808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 24026169 - 24026066
Alignment:
Q  205 taacaatttctgaaaatctgaactttaatggagagtgttgtattttcatggtgcttctatgtgagattcaagtgaaggaa-gagg--gaaaaggagactg 301  Q
    ||||||||||||||||| || |||| ||| ||| ||||||||| || ||||| |||| |||||||| | ||||||||||| ||||  ||||||||||||     
T  24026169 taacaatttctgaaaatttgtacttcaatagagggtgttgtatgttaatggtacttcaatgtgaga-tgaagtgaaggaaggagggagaaaaggagacta 24026071  T
Q  302 aagtg 306  Q
    |||||    
T  24026070 aagtg 24026066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 535
Target Start/End: Original strand, 2197003 - 2197076
Alignment:
Q  462 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    ||||||| ||||||||| ||  | || |||||| ||||||||||||||   |||||||||| ||||||||||||    
T  2197003 accgccagctgtccttccatacaaaaattgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 2197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 256 - 535
Target Start/End: Original strand, 18457662 - 18457946
Alignment:
Q  256 tgcttctatgtgagattcaagtgaaggaagagggaaaaggagactgaagtgaggttaaggatgtgtag-----tgttagtgtgaattgctactctgcatt 350  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || | |||||| ||     ||||||||||||||||| |||||||||    
T  18457662 tgcttctatgtgagattcaagtgaaggaagaggaaaaaggagattgaagtgagattcaagatgtgcagcgacgtgttagtgtgaattgcttctctgcatt 18457761  T
Q  351 ttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttct-attaaaatatgtttcattttattattgatttaattttagcaggtaatcc 449  Q
    ||| |||||| ||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||  |||||||| | ||||| ||||||||||| ||||    
T  18457762 ttcggatttgaggggtgtatacagcaaaaacaataaaaccaata-tttctcattataatatgttttcttttattaattatttatttttagcaggtcatcc 18457860  T
Q  450 aaccccaccaaaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||||||||||||||||  |||||||||||| |||| || ||| ||||||||||||||| ||||||||||||||||||||||||    
T  18457861 aaccccaccaaaaccgccatttgtccttcaatgcacaatttttgcatggtgcacaaatcttatatttgtgcattctaaatgccacc 18457946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 29076026 - 29076078
Alignment:
Q  484 acaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29076026 acaagttgtgcatggtgcacaaatcttgtatttgtgcattctaaatgccacca 29076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 535
Target Start/End: Original strand, 43881958 - 43882132
Alignment:
Q  361 gggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaa 460  Q
    |||||||||| ||| |||| ||||| |||||||| |||| |||| |||||||||| |||||||| || |||| ||| ||||||| |   ||| ||  |||    
T  43881958 gggggtgtatccagtaaaagcaatataaccaatattttccattataatatgtttccttttattaatggtttattttcagcaggtcaaataacacccacaa 43882057  T
Q  461 aaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    ||| |||||||||||   ||| |     ||| || || |||||||||||| ||||||||||||||||||||||||    
T  43882058 aactgccacctgtccagaaatttgtggtttgggcatgatgcacaaatcttatatttgtgcattctaaatgccacc 43882132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 357 - 477
Target Start/End: Complemental strand, 7404 - 7284
Alignment:
Q  357 tttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaacccca 456  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||| |||||||||| ||||| ||| ||||||| | || ||||||    
T  7404 tttggggggtgtatccagcaaaaacaataaaaccaatattttccattataatatgtttccttttattatttatttattttcagcaggtcaccccacccca 7305  T
Q  457 ccaaaaccgccacctgtcctt 477  Q
    ||||||| | |||||||||||    
T  7304 ccaaaactgtcacctgtcctt 7284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 11240882 - 11240985
Alignment:
Q  328 agtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattg 427  Q
    |||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| ||    
T  11240882 agtgtgaattgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataatatgtttccttttattaatg 11240981  T
Q  428 attt 431  Q
    ||||    
T  11240982 attt 11240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 462 - 536
Target Start/End: Original strand, 13579007 - 13579081
Alignment:
Q  462 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    ||||||| ||||||||| ||| ||||||||||| || ||||||||||||| |||||||||| |||||||||||||    
T  13579007 accgccaactgtccttccatgcacaagttgtgcatgatgcacaaatcttgcatttgtgcatactaaatgccacca 13579081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 22278857 - 22278960
Alignment:
Q  205 taacaatttctgaaaatctgaactttaatggagagtgttgtattttcatggtgcttctatgtgagattcaagtgaaggaa-gagg--gaaaaggagactg 301  Q
    ||||||||||||||||| || |||| ||| ||||||||||||| || ||||| |||| |||||||||| ||||||||||| ||||  ||||||||||||     
T  22278857 taacaatttctgaaaatttgtacttcaatagagagtgttgtatgttaatggtacttcaatgtgagatt-aagtgaaggaaggagggagaaaaggagacta 22278955  T
Q  302 aagtg 306  Q
    |||||    
T  22278956 aagtg 22278960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 536
Target Start/End: Original strand, 22292770 - 22292846
Alignment:
Q  460 aaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    ||||||||| ||||||||| |||   || |||||| ||||||||||||||   |||||||||| |||||||||||||    
T  22292770 aaaccgccagctgtccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgcatactaaatgccacca 22292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 461 - 535
Target Start/End: Original strand, 31893429 - 31893503
Alignment:
Q  461 aaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  31893429 aaccgccacctgtccttcaatgcacaaattgtgcatggtgcacaaatcttgtatttgtgcattctaaatgccacc 31893503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 1114746 - 1114785
Alignment:
Q  150 gagttctatttctctagaacaaatcaagaaaataacctcc 189  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1114746 gagttctatttctctagaacaaatcaagaaaataacctcc 1114785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 129991 - 130077
Alignment:
Q  328 agtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgttt 414  Q
    |||||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||| ||||| |||| |||| |||||||||    
T  129991 agtgtgaattgctactctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataatatgttt 130077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 45482965 - 45483048
Alignment:
Q  361 gggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggt 444  Q
    |||||||||| ||| ||||||||||||||||||| |||  |||| |||||||||| |||||||||| ||||| ||| |||||||    
T  45482965 gggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgtttccttttattatttatttattttcagcaggt 45483048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 15190275 - 15190347
Alignment:
Q  536 agtaaacacgtccaacaaaatccaacatcttaaacggtctctttccccatgcccttgcattctttccacccttt 609  Q
    |||||||| |||||||||||| |||||  |||||| |||||||| ||  |||||||||||||||||||||||||    
T  15190275 agtaaacatgtccaacaaaattcaacactttaaacagtctcttt-cctgtgcccttgcattctttccacccttt 15190347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 531
Target Start/End: Complemental strand, 23475939 - 23475897
Alignment:
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgc 531  Q
    |||||| ||||||||||||||| |||||||| |||||||||||    
T  23475939 ttgtgcatggtgcacaaatcttatatttgtgtattctaaatgc 23475897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 41708461 - 41708415
Alignment:
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||| |||||||||||| |  ||||||||||||||||||||||||    
T  41708461 ttgtgcatggtgcacaaatttaatatttgtgcattctaaatgccacc 41708415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 9866197 - 9866132
Alignment:
Q  470 ctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    ||||||||| ||| | || |||||| ||||||||||||||   |||||||||| ||||||||||||    
T  9866197 ctgtccttccatggaaaaattgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 9866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 535
Target Start/End: Complemental strand, 32057321 - 32057265
Alignment:
Q  479 aatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||| ||||||||||| |||||||||||||||    |||||||| ||||||||||||    
T  32057321 aatgcacaagttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 32057265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 332 - 448
Target Start/End: Original strand, 15746533 - 15746648
Alignment:
Q  332 tgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatg-tttcattttattattgatt 430  Q
    |||||||||  ||||||||||||| ||  |||||||| | ||||||||||||||||||||||| ||||||||| |||||| |||| |||||||| |||||    
T  15746533 tgaattgctgttctgcattttcagttt--gggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttccttttattaatgatt 15746630  T
Q  431 taattttagcaggtaatc 448  Q
    || ||| |||||||||||    
T  15746631 tattttcagcaggtaatc 15746648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 462 - 539
Target Start/End: Original strand, 13926122 - 13926199
Alignment:
Q  462 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccaccagta 539  Q
    ||||||| ||||||||| ||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13926122 accgccagctgtccttccatacaaaagttgtgcatggtgcacaaatcttgtatttgtgcattctaaatgccaccagta 13926199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 473 - 536
Target Start/End: Complemental strand, 38656933 - 38656870
Alignment:
Q  473 tccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  38656933 tccttcaatgcacaagttgtgtatggtgcacaaatcttgtatttgtgcattctaaatgccacca 38656870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 329 - 474
Target Start/End: Complemental strand, 44212903 - 44212757
Alignment:
Q  329 gtgtgaattgctactctgcat-tttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattg 427  Q
    ||||||||| |||||||  || ||| || ||||| ||||||||  |||||||||||||||||||||| |||  |||| |||||||||  |||||||| ||    
T  44212903 gtgtgaattactactctcaatgtttaagttttggagggtgtatctagcaaaaacaataaaaccaatatttttcattataatatgttttcttttattaatg 44212804  T
Q  428 atttaattttagcaggtaatccaaccccaccaaaaccgccacctgtc 474  Q
     |||| |||||||| || | || |||||||||||||| ||| |||||    
T  44212803 gtttatttttagcaagtcaccccaccccaccaaaacctccatctgtc 44212757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 17335504 - 17335401
Alignment:
Q  205 taacaatttctgaaaatctgaactttaatggagagtgttgtattttcatggtgcttctatgtgagattcaagtgaaggaa-gagg--gaaaaggagactg 301  Q
    ||||||||||||||||| || |||| ||| ||| ||||||||| || ||||| |||| |||||||||| ||||||||||| ||||  ||||||||||||     
T  17335504 taacaatttctgaaaatttgtacttcaatagagtgtgttgtatgttaatggtacttcaatgtgagatt-aagtgaaggaaggagggagaaaaggagacta 17335406  T
Q  302 aagtg 306  Q
    |||||    
T  17335405 aagtg 17335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 535
Target Start/End: Original strand, 13931841 - 13931897
Alignment:
Q  479 aatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||| ||||||||||| |||||||||||||||    |||||||| ||||||||||||    
T  13931841 aatgcacaagttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 13931897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 461 - 535
Target Start/End: Complemental strand, 43259874 - 43259800
Alignment:
Q  461 aaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||||||||||||||||||| | || |||||| |||||||||||| |||||||||||||||||||||||||||    
T  43259874 aaccgccacctgtccttcaatgcataaattgtgcatggtgcacaaattttgtatttgtgcattctaaatgccacc 43259800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 360 - 535
Target Start/End: Complemental strand, 47336141 - 47335965
Alignment:
Q  360 ggggggtgtattcagcaaaaacaataaaaccaa-tactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccacc 458  Q
    ||||||||||  || |||||||||||||||||| || |||| |||| |||||||||  |||||||||| ||||| ||| ||||||| | || ||||||||    
T  47336141 ggggggtgtaaccaccaaaaacaataaaaccaaatattttccattataatatgttttcttttattatttatttattttcagcaggtcaccccaccccacc 47336042  T
Q  459 aaaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    ||||| | |||| |||| | || ||     |||||| ||||||||||||| || |||||||||| | ||||||||||    
T  47336041 aaaactgtcaccagtccataaaagtgttgtttgtgcatggtgcacaaatcatgcatttgtgcataccaaatgccacc 47335965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 18182033 - 18181988
Alignment:
Q  21 ttagctcagaggttagagcatcgcatttgtaatgcgatggtcatcg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18182033 ttagctcagaggttagagcatcgcatttgtaatgcgatggtcatcg 18181988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 18181896 - 18181854
Alignment:
Q  147 tgggagttctatttctctagaacaaatcaagaaaataacctcc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18181896 tgggagttctatttctctagaacaaatcaagaaaataacctcc 18181854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 47326275 - 47326315
Alignment:
Q  496 tggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  47326275 tggtgcacaaatcttgcatttgtgtatactaaatgccacca 47326315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 496 - 536
Target Start/End: Original strand, 47341071 - 47341111
Alignment:
Q  496 tggtgcacaaatcttgtatttgtgcattctaaatgccacca 536  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  47341071 tggtgcacaaatcttgcatttgtgtatactaaatgccacca 47341111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 329 - 415
Target Start/End: Complemental strand, 48735099 - 48735013
Alignment:
Q  329 gtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttc 415  Q
    ||||||||||||||||||||||||||| ||||| ||||||   ||||||||||||||||||||||| |||| |||| ||||||||||    
T  48735099 gtgtgaattgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgtttc 48735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 28032921 - 28032875
Alignment:
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28032921 ttgtgcatggtgcacaaatcttatatttgtgcattctaaatgccacc 28032875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 48734956 - 48734910
Alignment:
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  48734956 ttgtgcatggtgcacaaatcttatatttgtgcattctaaatgccacc 48734910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 10460578 - 10460624
Alignment:
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||| |||||||||||| | |||||||||||||||||||||||||    
T  10460578 ttgtgcatggtgcacaaatttggtatttgtgcattctaaatgccacc 10460624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 15389557 - 15389517
Alignment:
Q  149 ggagttctatttctctagaacaaatcaagaaaataacctcc 189  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  15389557 ggagttccatttctctagaacatatcaagaaaataacctcc 15389517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 10909 - 10867
Alignment:
Q  147 tgggagttctatttctctagaacaaatcaagaaaataacctcc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10909 tgggagttctatttctctagaacaaatcaagaaaataacctcc 10867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 246194 - 246149
Alignment:
Q  21 ttagctcagaggttagagcatcgcatttgtaatgcgatggtcatcg 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  246194 ttagctcagaggttagagcatcgcatttgtaatgcgagggtcatcg 246149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 286 - 332
Alignment:
Q  489 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 535  Q
    |||||| |||||||||||| || ||||||||||||||||||| ||||    
T  286 ttgtgcatggtgcacaaattttatatttgtgcattctaaatggcacc 332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University