View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21662_high_1 (Length: 856)

Name: NF21662_high_1
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21662_high_1
NF21662_high_1
[»] chr1 (17 HSPs)
chr1 (456-838)||(9070279-9070665)
chr1 (11-301)||(9070820-9071107)
chr1 (295-462)||(9070659-9070826)
chr1 (716-838)||(9125747-9125869)
chr1 (45-229)||(8862754-8862938)
chr1 (718-832)||(8979575-8979689)
chr1 (698-838)||(9086578-9086718)
chr1 (11-119)||(9087308-9087410)
chr1 (347-462)||(9087008-9087123)
chr1 (169-296)||(9108990-9109116)
chr1 (783-838)||(8862169-8862224)
chr1 (783-838)||(8866044-8866099)
chr1 (259-301)||(9126263-9126305)
chr1 (405-462)||(8862628-8862685)
chr1 (28-119)||(8866730-8866818)
chr1 (261-301)||(8862679-8862719)
chr1 (393-440)||(9126200-9126247)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 456 - 838
Target Start/End: Complemental strand, 9070665 - 9070279
Alignment:
Q  456 tttctcagtttgagttggcccaaacaaagtcgtgcgaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaataccaccaaacctggcattgaat 555  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9070665 tttctcagattgagttggcccaaacaaagttgtgcaaagtgcgagtcaaaaggcatgaaatgcaaatggatgaacaacaccaccaaacctggcattgaat 9070566  T
Q  556 gtttttattgcaaccataaacataaaaaatttcagcctccaaaagctcttattttttcagctataggtgagtctttattatatttcaaagtactatttgc 655  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9070565 gtttttattgcaaccaaaaacataaaaaatttcagcctccaaaagctcttattttttcggctataggtgagtctttattatatttcaaagtactatttgc 9070466  T
Q  656 gtcttctttattattttatttgtttatactgggaggaaaatgtaactgttaatgtgt----taatgcaggttcaattatattgggaatgggaaccattgt 751  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||    
T  9070465 gtcttctttattattttatttgtttatactgggaggaaaatgtaactgttaatgtgttaattaatgcaggttcaattatattgggaatgggcaccattgt 9070366  T
Q  752 atttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagtttttagaggattatagagcccaaaa 838  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070365 atttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagtttttagaggattatagagcccaaaa 9070279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 9071107 - 9070820
Alignment:
Q  11 atcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtcca 110  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9071107 atcatcacaagatcaa---tgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtcca 9071011  T
Q  111 atcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9071010 atcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaatt 9070911  T
Q  211 catcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactgctcttcagttaggaaacgacacttgagaaa 301  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  9070910 catcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactgcttttcagttaggaaacaacacttgagaaa 9070820  T

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Target: chr1; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 295 - 462
Target Start/End: Original strand, 9070659 - 9070826
Alignment:
Q  295 tgagaaaattagacctcaggtctgatcctatcatagacgcgttgacgtcggacatcttggtacaagatacaaggtccaaatcaacgatatcttcgtccga 394  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  9070659 tgagaaaattatacctcaggtctgatcccatcatagacgcgttgacgtcgaacatcttagtacaagatagaaggtccaaatcaacgatatcttcgtccga 9070758  T
Q  395 atcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070759 atcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctca 9070826  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 716 - 838
Target Start/End: Complemental strand, 9125869 - 9125747
Alignment:
Q  716 tgcaggttcaattatattgggaatgggaaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagttt 815  Q
    ||||||||||||| |||||||  ||   ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  9125869 tgcaggttcaattttattggggttgctcaccattgcatttataaagatttatctacatttcagagaaaaagaagaagatcaagttagagttgataggttt 9125770  T
Q  816 ttagaggattatagagcccaaaa 838  Q
    ||||||||||||||||| |||||    
T  9125769 ttagaggattatagagcacaaaa 9125747  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 8862938 - 8862754
Alignment:
Q  45 gagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaat 144  Q
    ||||| |||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||||||||||||||| ||| | | | || ||||||||||    
T  8862938 gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcctctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaat 8862839  T
Q  145 cacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccg 229  Q
    || ||   || ||| |    ||||| ||||||||| |||| ||||||||| ||| ||| ||||| |||||||||| |||||||||    
T  8862838 caaaccgaatttcagtgatggacccggacaattgcattcctaaaaagtttctgaaacttaacaactcatcatttctaccttaccg 8862754  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 718 - 832
Target Start/End: Complemental strand, 8979689 - 8979575
Alignment:
Q  718 caggttcaattatattgggaatgggaaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagttttt 817  Q
    ||||||||||| | |||||  |||  |||||| ||||||||||||| ||| |  |||| ||| ||||||||||||||||||||||| |||| ||||||||    
T  8979689 caggttcaattgttttggggttggttaccattatatttattaagatctatttatattttagaaaaaaagaagaagatcaagttagagttgacaagttttt 8979590  T
Q  818 agaggattatagagc 832  Q
    |||||||||||||||    
T  8979589 agaggattatagagc 8979575  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 698 - 838
Target Start/End: Complemental strand, 9086718 - 9086578
Alignment:
Q  698 taactgttaatgtgttaatgcaggttcaattatattgggaatgggaaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaa 797  Q
    ||||| ||||| || || |||||| ||||||||||||||  |||  | ||||| | |||  ||||||||||| ||||| || | |||| |||||||||||    
T  9086718 taacttttaatatgatattgcagggtcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaagaagatcaa 9086619  T
Q  798 gttagaattgataagtttttagaggattatagagcccaaaa 838  Q
    ||||||||||||||||||||||| |||| |||||| |||||    
T  9086618 gttagaattgataagtttttagatgattttagagcacaaaa 9086578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 9087410 - 9087308
Alignment:
Q  11 atcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtcca 110  Q
    ||||||||||||||||   ||||||||||||   ||||| ||| ||||||||||| ||||||||| ||||||||| || |||||| ||  ||||||||||    
T  9087410 atcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctctcttccaattcaggtcca 9087317  T
Q  111 atcaaattc 119  Q
    |||||||||    
T  9087316 atcaaattc 9087308  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 462
Target Start/End: Original strand, 9087008 - 9087123
Alignment:
Q  347 catcttggtacaagatacaaggtccaaatcaacgatatcttcgtccgaatcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtc 446  Q
    |||||||||||| ||| |||||||||| |  |||| |  ||| || |||| || | | ||||||||||||||||||||||||||||| |||| |  | ||    
T  9087008 catcttggtacatgatgcaaggtccaacttgacgacactttcatcagaataagaagcgtaaattggacaagtgatcatatcttgtgaatctttgtttatc 9087107  T
Q  447 tgatattggtttctca 462  Q
    ||||||||||||||||    
T  9087108 tgatattggtttctca 9087123  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 9109116 - 9108990
Alignment:
Q  169 cagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaa 268  Q
    ||||||||||||||| ||||| |||||| || ||||||| ||||||||||  ||||||| | ||| |||| ||| |  |||| | ||| | ||||| |||    
T  9109116 cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaa 9109018  T
Q  269 ctgctcttcagttaggaaacgacacttg 296  Q
    |||||||||||||| |||||| ||||||    
T  9109017 ctgctcttcagttaagaaacggcacttg 9108990  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 783 - 838
Target Start/End: Complemental strand, 8862224 - 8862169
Alignment:
Q  783 aaagaagaagatcaagttagaattgataagtttttagaggattatagagcccaaaa 838  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||| |||| |||||    
T  8862224 aaagaagaggatcaaattagagttgataagtttttagaggattatcgagcacaaaa 8862169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 783 - 838
Target Start/End: Complemental strand, 8866099 - 8866044
Alignment:
Q  783 aaagaagaagatcaagttagaattgataagtttttagaggattatagagcccaaaa 838  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||| |||| |||||    
T  8866099 aaagaagaggatcaaattagagttgataagtttttagaggattatcgagctcaaaa 8866044  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 301
Target Start/End: Complemental strand, 9126305 - 9126263
Alignment:
Q  259 tcttcttcaactgctcttcagttaggaaacgacacttgagaaa 301  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  9126305 tcttcttcaactgctcttcggttaggaaacgacacctgagaaa 9126263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 8862628 - 8862685
Alignment:
Q  405 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctca 462  Q
    |||| |||||| |||||||||||||| |||||||||||||| ||||  ||||||||||    
T  8862628 taaactggacaggtgatcatatcttgcgactcttgggatgtttgatcatggtttctca 8862685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 8866818 - 8866730
Alignment:
Q  28 aatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattc 119  Q
    ||||||||||||||   ||||| ||||||||||||||| |||| ||||| |||||||| ||  | |||||| ||||||||||| ||| ||||    
T  8866818 aatgtgtttatcct---gagttttgcctatattgtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattc 8866730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 8862719 - 8862679
Alignment:
Q  261 ttcttcaactgctcttcagttaggaaacgacacttgagaaa 301  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  8862719 ttcttcaattgctcttcagttaggaaacaacacttgagaaa 8862679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 9126200 - 9126247
Alignment:
Q  393 gaatcagcaacataaattggacaagtgatcatatcttgtgactcttgg 440  Q
    ||||||||| | ||||||||||| |||||||||||||||||| |||||    
T  9126200 gaatcagcagcgtaaattggacatgtgatcatatcttgtgacccttgg 9126247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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