View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21662_high_16 (Length: 397)

Name: NF21662_high_16
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21662_high_16
NF21662_high_16
[»] chr3 (6 HSPs)
chr3 (8-373)||(288317-288681)
chr3 (121-165)||(46977294-46977338)
chr3 (88-136)||(24239162-24239210)
chr3 (19-72)||(14236558-14236610)
chr3 (32-88)||(17636005-17636061)
chr3 (314-378)||(46977498-46977562)
[»] chr2 (4 HSPs)
chr2 (97-377)||(24527670-24527947)
chr2 (88-377)||(24522904-24523190)
chr2 (15-88)||(25330269-25330342)
chr2 (40-88)||(27147114-27147163)
[»] chr7 (2 HSPs)
chr7 (15-88)||(17229772-17229844)
chr7 (40-72)||(22480986-22481018)
[»] chr6 (2 HSPs)
chr6 (182-244)||(11849291-11849351)
chr6 (20-72)||(14867751-14867802)
[»] chr8 (1 HSPs)
chr8 (15-56)||(30776226-30776267)
[»] chr5 (1 HSPs)
chr5 (20-67)||(24400027-24400074)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 373
Target Start/End: Complemental strand, 288681 - 288317
Alignment:
Q  8 tactagaattattatggattgactttgtatatggttcagacctctcctgacttttatatttcattctagctttatcaaaaatattcctctttttctatta 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  288681 tactagaattattatggattgactttgtatatggttcaggcctctcctgacttttatatttcattctagctttatcaaaaaaatttctctttttctatta 288582  T
Q  108 tgaagggtgagtgaagtatattcaatcaaatctttttattattacatggtcggttaagnnnnnnnnnnnnaaattatacacaaaaacaat-ttaatatct 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||            ||||||||||| |||||||| |||||||||    
T  288581 tgaagggtgagttaagtatattcaatcaaatctttttattattacatggttggttaagttttttaaaa--aaattatacacgaaaacaatattaatatct 288484  T
Q  207 tccctctcaaaacaaaagccatttacaacttagctcctggaaaattcttccaaaatctggttgttgattataacgttggattcgccatcgcttagaggaa 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  288483 tccctctcaaaacaaaagccatttacaacttagctccaggaaaattcttccgaaatttggttgtcgattataacgttggattcgccatagcttagaggaa 288384  T
Q  307 ggaatcatgtcatatatgtgtggttgtcgttacttgcatccttcaacacatagtttcattttaagtg 373  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  288383 ggaatcatgacatatacgtgtggttgtcgttacttgcatcattcaacacatagtttcattttaagtg 288317  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 46977294 - 46977338
Alignment:
Q  121 aagtatattcaatcaaatctttttattattacatggtcggttaag 165  Q
    |||||| |||||||||||||||||||||||||||||||| |||||    
T  46977294 aagtattttcaatcaaatctttttattattacatggtcgattaag 46977338  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 24239162 - 24239210
Alignment:
Q  88 atattcctctttttctattatgaagggtgagtgaagtatattcaatcaa 136  Q
    |||||||| |||||||||||||||||| || | ||||||||||||||||    
T  24239162 atattcctatttttctattatgaagggagattcaagtatattcaatcaa 24239210  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 14236610 - 14236558
Alignment:
Q  19 ttatggattgactttgtatatggttcagacctctcctgacttttatatttcatt 72  Q
    ||||||||||| ||||||| |||||||| |||||||||||| || |||||||||    
T  14236610 ttatggattgattttgtatttggttcaggcctctcctgactctt-tatttcatt 14236558  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 17636005 - 17636061
Alignment:
Q  32 ttgtatatggttcagacctctcctgacttttatatttca-ttctagctttatcaaaaa 88  Q
    |||||| ||||||||||||||||||| ||||||||| || || |||||||||||||||    
T  17636005 ttgtatttggttcagacctctcctga-ttttatattgcatttttagctttatcaaaaa 17636061  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 46977498 - 46977562
Alignment:
Q  314 tgtcatatatgtgtggttgtcgttacttgcatccttcaacacatagtttcattttaagtggatca 378  Q
    |||||||| |||| ||||||||||||| ||||||||  |||||||  |||||||| | |||||||    
T  46977498 tgtcatatctgtgaggttgtcgttactcgcatcctttgacacataaattcattttcaatggatca 46977562  T

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Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 97 - 377
Target Start/End: Complemental strand, 24527947 - 24527670
Alignment:
Q  97 tttttctattatgaagggtgagtgaagtatattcaatcaaatctttttattattacatggtcggttaagnnnnnnnnnnnnaaattatacacaaaaacaa 196  Q
    |||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||            ||| ||||||||||||| |    
T  24527947 tttttctattctgaagggagattcaagtatattcaatcaaatctttttattattacatggtcggttaagttttttta----aaactatacacaaaaacta 24527852  T
Q  197 tt-taatatcttccctctcaaaacaaaagccatttacaacttagctcctggaaaattcttccaaaatctggttgttgattataacgttggattcgccatc 295  Q
       ||||||| |||||||||||||||||  | | |||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||| || ||    
T  24527851 cagtaatatcatccctctcaaaacaaaattcgtctacaacttagctcctggaaaattcttccgaaatctggttcttgattagaatgttggattcaccgtc 24527752  T
Q  296 gcttagaggaaggaatcatgtcatatatgtgtggttgtcgttacttgcatccttcaacacatagtttcattttaagtggatc 377  Q
     || ||| ||  ||| ||||||||||| || ||||| |||||| ||| |||||| |||||||||||||||||||||||||||    
T  24527751 actgagaagatagaaacatgtcatatacgtctggttatcgttatttgtatcctttaacacatagtttcattttaagtggatc 24527670  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 377
Target Start/End: Complemental strand, 24523190 - 24522904
Alignment:
Q  88 atattcctctttttctattatgaagggtgagtgaagtatattcaatcaaatctttttattattacatggtcggttaagnnnnnnnnnnnnaaattataca 187  Q
    |||||||| |||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||            ||| ||||||    
T  24523190 atattcctatttttctattatgaagggagattcaagtatattcaatcaaatctttttattattacatggtcggttaagttttttaa----aaactataca 24523095  T
Q  188 caaaaacaatt-taatatcttccctctcaaaacaaaagccatttacaacttagctcctggaaaattcttccaaaatctggttgttgattataacgttgga 286  Q
    ||||||| |   |||| ||||||||||||||||||||  | ||||||||||||||   ||||||||||||| |||||||||| | ||||| || | | ||    
T  24523094 caaaaactacaataatgtcttccctctcaaaacaaaattcgtttacaacttagctttaggaaaattcttccgaaatctggttctcgattagaatgcttga 24522995  T
Q  287 ttcgccatcgcttagaggaaggaatcatgtcatatatgtgtggttgtcgttacttgcatccttcaacacatagtttcattttaagtggatc 377  Q
    |||||  || || | ||||| ||| |||||||||||||| |||||||| ||| | | ||||||||||||||| ||||||||||||||||||    
T  24522994 ttcgcagtcactgacaggaaagaaacatgtcatatatgtctggttgtcattattcgtatccttcaacacataatttcattttaagtggatc 24522904  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 25330342 - 25330269
Alignment:
Q  15 attattatggattgactttgtatatggttcagacctctcctgact-tttatatttcattctagctttatcaaaaa 88  Q
    |||||||||||||||||||||||| ||||||| |||||||||  | ||| ||||||||| || ||||||||||||    
T  25330342 attattatggattgactttgtataaggttcaggcctctcctggttctttttatttcatt-tacctttatcaaaaa 25330269  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 27147163 - 27147114
Alignment:
Q  40 ggttcagacctctcctgacttttatatttca-ttctagctttatcaaaaa 88  Q
    ||||||||| ||||||||||||||||||  | ||||||||||||||||||    
T  27147163 ggttcagacatctcctgacttttatattgaatttctagctttatcaaaaa 27147114  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 17229772 - 17229844
Alignment:
Q  15 attattatggattgactttgtatatggttcagacctctcctgacttttatatttcattctagctttatcaaaaa 88  Q
    ||||||||||||||| |||||||||||||||| |||||||||  | || ||||||||| || ||||||||||||    
T  17229772 attattatggattgaatttgtatatggttcaggcctctcctggttcttttatttcatt-tacctttatcaaaaa 17229844  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 22481018 - 22480986
Alignment:
Q  40 ggttcagacctctcctgacttttatatttcatt 72  Q
    ||||||| |||||||||||||||||||||||||    
T  22481018 ggttcaggcctctcctgacttttatatttcatt 22480986  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 11849291 - 11849351
Alignment:
Q  182 tatacacaaaaacaatttaatatcttccctctcaaaacaaaagccatttacaacttagctcct 244  Q
    |||||| |||||||  ||||||| ||||||||||||||||||  |||||||||||||||||||    
T  11849291 tatacataaaaaca--ttaatatattccctctcaaaacaaaaatcatttacaacttagctcct 11849351  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 14867802 - 14867751
Alignment:
Q  20 tatggattgactttgtatatggttcagacctctcctgacttttatatttcatt 72  Q
    |||||||||| ||||||| |||||||| |||||||||||| || |||||||||    
T  14867802 tatggattgattttgtatttggttcaggcctctcctgactctt-tatttcatt 14867751  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 30776267 - 30776226
Alignment:
Q  15 attattatggattgactttgtatatggttcagacctctcctg 56  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  30776267 attattatggattgactttgtataaggttcaaacctctcctg 30776226  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 24400027 - 24400074
Alignment:
Q  20 tatggattgactttgtatatggttcagacctctcctgacttttatatt 67  Q
    |||||||| | ||||||| ||||||||||||||||||| |||||||||    
T  24400027 tatggattaattttgtatttggttcagacctctcctgatttttatatt 24400074  T

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