View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21662_high_18 (Length: 330)
Name: NF21662_high_18
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_high_18 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 49708520 - 49708824
Alignment:
| Q |
16 |
attataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgtttcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49708520 |
attataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgtttcta |
49708619 |
T |
|
| Q |
116 |
cggtgctcaagcttccatctgtatccctactaagttgttctccgaaagcaataaccggaagagcggacgcaaagaatatgtagaaagttggagccaatat |
215 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
49708620 |
cagtgctcaagcttccatctgtatccctactaagttgttctccgaaagcaataaccggaagagcggacgcagaaaatatgtagaaagttggagccaatat |
49708719 |
T |
|
| Q |
216 |
gctgtcattattattaatcaatcataaatcagagatgttgcaaatgaacacaacaaacaacaaaaattatagtcctagatacaatatgaaaatgaacaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49708720 |
gctgtcattattattaatcaatcataaatcagagatgttgcaaatgaacacaacaaacaacaaaaattatagtcctagatacaatatgaaaatgaacaag |
49708819 |
T |
|
| Q |
316 |
aataa |
320 |
Q |
| |
|
||||| |
|
|
| T |
49708820 |
aataa |
49708824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 2233147 - 2233028
Alignment:
| Q |
19 |
ataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgtttctacgg |
118 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||| ||||| | ||||| || ||||||||||| || || || |||| ||||||||| || | |
|
|
| T |
2233147 |
ataacagttggttcagcaattcctacaatcaacaaaggttgaccaccaaatattgagtggataattccacatatagctgtggatgtcaatgtttcaactg |
2233048 |
T |
|
| Q |
119 |
tgctcaagcttccatctgta |
138 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
2233047 |
tgctcaagattccacctgta |
2233028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 2232101 - 2232032
Alignment:
| Q |
146 |
taagttgttctccgaaagcaataaccggaagagcggacgcaaagaatatgtagaaagttggagccaatat |
215 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || || ||||||||||||||||||||||| |||||||| |
|
|
| T |
2232101 |
taagttgttctccaaaagcaataacaggaagtgcagaagcaaagaatatgtagaaagttggggccaatat |
2232032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 45078017 - 45077927
Alignment:
| Q |
22 |
acagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgttt |
112 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || | ||| |||||||| |||| |
|
|
| T |
45078017 |
acagtaggttctgccactcctaaaatcagtaaaggttgaccaccaatgattgagtgtataatgccacatattgaagttgatgccaaggttt |
45077927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 12306367 - 12306277
Alignment:
| Q |
22 |
acagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgttt |
112 |
Q |
| |
|
|||||||||||||| || || | ||||||||||| ||||| || ||||| || || ||||||||||| | ||||||||||| ||||||| |
|
|
| T |
12306367 |
acagttggttctgctacaccaagtatcaacaaaggctggcctccaataatagagtgtataattccacacagtgcagtagatgctaatgttt |
12306277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 8504 - 8557
Alignment:
| Q |
82 |
attccacaaatggcagtagatgccaatgtttctacggtgctcaagcttccatct |
135 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| || ||||| |||||||||||| |
|
|
| T |
8504 |
attccacaaatggctgtagaagccagtgtttccacagtgcttaagcttccatct |
8557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 8428 - 8481
Alignment:
| Q |
82 |
attccacaaatggcagtagatgccaatgtttctacggtgctcaagcttccatct |
135 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||| || ||||| |||||||||||| |
|
|
| T |
8428 |
attccacaaatggctgtagaagccagtgtttccacagtgcttaagcttccatct |
8481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University