View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21662_high_30 (Length: 244)

Name: NF21662_high_30
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21662_high_30
NF21662_high_30
[»] chr5 (11 HSPs)
chr5 (19-240)||(6966603-6966824)
chr5 (153-244)||(747089-747180)
chr5 (145-244)||(26394310-26394409)
chr5 (68-244)||(40988344-40988517)
chr5 (151-244)||(5381043-5381136)
chr5 (145-244)||(38090970-38091069)
chr5 (68-244)||(25752434-25752606)
chr5 (147-244)||(25525379-25525476)
chr5 (145-244)||(33159411-33159510)
chr5 (187-244)||(39048070-39048127)
chr5 (145-222)||(25752303-25752380)
[»] chr1 (8 HSPs)
chr1 (149-244)||(9034011-9034106)
chr1 (146-244)||(37328049-37328147)
chr1 (145-244)||(32536767-32536866)
chr1 (145-244)||(45217194-45217293)
chr1 (147-244)||(27134860-27134957)
chr1 (151-244)||(44744021-44744114)
chr1 (68-244)||(52580035-52580208)
chr1 (185-244)||(7875301-7875360)
[»] chr3 (15 HSPs)
chr3 (141-244)||(33237344-33237447)
chr3 (145-244)||(40278724-40278823)
chr3 (145-244)||(3021674-3021773)
chr3 (145-244)||(27655841-27655940)
chr3 (145-244)||(43914116-43914215)
chr3 (145-244)||(22847314-22847413)
chr3 (145-244)||(37090052-37090151)
chr3 (145-244)||(45149381-45149480)
chr3 (145-244)||(1587427-1587526)
chr3 (145-244)||(45969756-45969855)
chr3 (185-244)||(36951501-36951560)
chr3 (151-244)||(17754412-17754505)
chr3 (151-244)||(19055732-19055825)
chr3 (68-244)||(29492522-29492695)
chr3 (145-244)||(33777949-33778048)
[»] chr8 (8 HSPs)
chr8 (140-244)||(30728527-30728631)
chr8 (68-244)||(41542667-41542840)
chr8 (148-244)||(41576312-41576408)
chr8 (145-244)||(12764681-12764780)
chr8 (151-244)||(34055645-34055738)
chr8 (185-244)||(41393168-41393227)
chr8 (145-217)||(39584068-39584140)
chr8 (94-240)||(33583334-33583480)
[»] chr7 (7 HSPs)
chr7 (145-244)||(40260163-40260262)
chr7 (145-244)||(28293967-28294066)
chr7 (147-244)||(4236728-4236825)
chr7 (155-244)||(35434984-35435073)
chr7 (145-244)||(33210859-33210958)
chr7 (192-244)||(41798739-41798791)
chr7 (152-232)||(21366841-21366919)
[»] chr4 (10 HSPs)
chr4 (145-244)||(36928016-36928115)
chr4 (145-244)||(40033767-40033866)
chr4 (145-244)||(42987451-42987550)
chr4 (147-244)||(220213-220311)
chr4 (151-244)||(54445135-54445228)
chr4 (158-241)||(39632987-39633070)
chr4 (151-238)||(38392628-38392715)
chr4 (149-244)||(46614172-46614267)
chr4 (151-244)||(1565352-1565444)
chr4 (189-244)||(40278876-40278931)
[»] chr2 (6 HSPs)
chr2 (145-244)||(10574497-10574596)
chr2 (152-244)||(27481697-27481789)
chr2 (145-244)||(5438616-5438715)
chr2 (145-244)||(18059918-18060017)
chr2 (185-244)||(41726516-41726575)
chr2 (145-244)||(43207445-43207544)
[»] chr6 (3 HSPs)
chr6 (147-244)||(8590092-8590189)
chr6 (68-244)||(26582630-26582803)
chr6 (145-244)||(1799110-1799209)
[»] scaffold0474 (1 HSPs)
scaffold0474 (152-244)||(12730-12822)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 6966603 - 6966824
Alignment:
Q  19 agtactcactacttatattaagttaggcctcatcgtttcatatagttactaattaatgatataatttctgtattccaggttatgtcatatctctcattag 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6966603 agtactcactacttatattaagtcaggcctcatcgtttcatatagttactaattaatgatataatttctgtattccaggttatgtcatatctctcattag 6966702  T
Q  119 ctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6966703 ctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctggtaaatcacattgcccagcaaagttatgtggtagatatcagttgtctgctgc 6966802  T
Q  219 tatggcattcttgtcttggttt 240  Q
    ||||||||||||||||||||||    
T  6966803 tatggcattcttgtcttggttt 6966824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 747089 - 747180
Alignment:
Q  153 tctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||| |||| |||||||||  | ||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||    
T  747089 tctgcatgaagccggtatatcacattgtactgcaaagttatgtgatagatatcaattttttgctgctatggcattcttgtcttggtttattt 747180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 26394409 - 26394310
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| ||||| |||||||| |||| |||||||||  |  |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  26394409 atagaccttctacatgaagccggtatatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttggtttattt 26394310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 40988517 - 40988344
Alignment:
Q  68 taattaatgatataatttctgtattccaggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctgg 167  Q
    |||||||||||||||||| | || | ||||  |||||||||||   |||||||||||||||||    ||    ||| ||||| |||||||||||||| ||    
T  40988517 taattaatgatataatttttataatgcaggaaatgtcatatct---attagctgcagcatgttaaatagattatgtcatagaccttctgcatgaagccgg 40988421  T
Q  168 taaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    || |||||||||  |  |||||||||||| ||||||||| || | ||||| |||| |||||||||||||||||||||    
T  40988420 tatatcacattgtactacaaagttatgtgatagatatcaattttttgctgttatgacattcttgtcttggtttattt 40988344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 5381043 - 5381136
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||| |||| |||||| ||  |  |||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  5381043 cttctgcatgaagccggtatatcacaatgtactacaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 5381136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 38090970 - 38091069
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| ||||||||| |||| |||| |||||||||  |  |||||||||||| ||||||||| || | |||||||||| |||||||||||||||||||||    
T  38090970 atagaccttctgcataaagccggtatatcacattgtactacaaagttatgtgatagatatcaattttttgctgctatgacattcttgtcttggtttattt 38091069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 244
Target Start/End: Original strand, 25752434 - 25752606
Alignment:
Q  68 taattaatgatataatttctgtattccaggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctgg 167  Q
    |||||||||||||||||| | || | ||||  |||||||||||   |||||||||||||||||    ||    ||| ||||| |||||||||||||| ||    
T  25752434 taattaatgatataatttttataatgcaggaaatgtcatatct---attagctgcagcatgttaaatagattatgtcatagaccttctgcatgaagccgg 25752530  T
Q  168 taaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    || |||||||||  |  |||||||||||| || |||||| || ||||||||||| ||||||| ||||||||||||||    
T  25752531 tagatcacattgttctacaaagttatgtgatatatatcaattttctgctgctat-gcattctcgtcttggtttattt 25752606  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 25525476 - 25525379
Alignment:
Q  147 agatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||| |||||||||| |||| || |||||| || ||||||||||||| ||||||||| || | |||  |||||||||| ||||||||||||||||    
T  25525476 agatcttttgcatgaagccggtagattacattgtcctgcaaagttatgtgatagatatcaattttttgcatctatggcatttttgtcttggtttattt 25525379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 33159411 - 33159510
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||     |||||||||||| || |||||| || | |||| ||||| |||||||||||||||||||||    
T  33159411 atagaccttctgcatgaagccggtatatcacattgtagtacaaagttatgtgataaatatcaattttttgctactatgacattcttgtcttggtttattt 33159510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 39048070 - 39048127
Alignment:
Q  187 aagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||| ||||||||| || | ||||||||||||||||||||| ||||||||||    
T  39048070 aagttatgtgatagatatcaattttatgctgctatggcattcttgtcatggtttattt 39048127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 25752303 - 25752380
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatg 222  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| || |||||| || ||||||||||||    
T  25752303 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatatatatcaattttctgctgctatg 25752380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 9034106 - 9034011
Alignment:
Q  149 atcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||||| |||| ||||||||| || ||||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||    
T  9034106 atcttctgcatgaagccggtagatcacattgtcctgcaaagttatgtgatagatatcaattttctgcggctatggcattcttgtcttggtttattt 9034011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 37328049 - 37328147
Alignment:
Q  146 tagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||| ||||||||||||||||||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  37328049 tagaccttctgcatgaagctggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 37328147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 32536767 - 32536866
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||    
T  32536767 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttggtatattt 32536866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 45217293 - 45217194
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||    
T  45217293 atagaccttctgcatgaagccggtatatcacattgtactacaaagttatgtgatagatatcaattttctgctgttatggcattcttgtcttggtttattt 45217194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 27134860 - 27134957
Alignment:
Q  147 agatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||||||| |||| ||| ||||| || ||||||||||||| |||||||||  | |||||||||||| |||||||||||| ||||||||    
T  27134860 agatcttctgcatgaagccggtagatcgcattgtcctgcaaagttatgtgatagatatcaactttctgctgctatgacattcttgtcttagtttattt 27134957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 44744114 - 44744021
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  44744114 cttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 44744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 52580208 - 52580035
Alignment:
Q  68 taattaatgatataatttctgtattccaggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctgg 167  Q
    |||||||||||||||||| | || | ||||  |||||||||||   |||||||||||||||||    ||    ||| ||||| |||||||||||||| ||    
T  52580208 taattaatgatataatttttataatgcaggaaatgtcatatct---attagctgcagcatgttaaatagattatgtcatagaccttctgcatgaagccgg 52580112  T
Q  168 taaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||| ||  |  |||||||||||| ||||||||| || | |||| ||||| ||||||||||||| |||||||    
T  52580111 taaatcacactgtactacaaagttatgtgatagatatcaattttttgctactatgacattcttgtcttgatttattt 52580035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 7875301 - 7875360
Alignment:
Q  185 caaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||| ||||||| | || ||| ||||||||||||||||||||||||||||||    
T  7875301 caaagttatgtgatagatataaattttctactgctatggcattcttgtcttggtttattt 7875360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 33237344 - 33237447
Alignment:
Q  141 tgttatagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggttt 240  Q
    ||||||||| |||||||||||||  |||| |||||||||  |  |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||    
T  33237344 tgttatagaccttctgcatgaagtcggtatatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttggttt 33237443  T
Q  241 attt 244  Q
    ||||    
T  33237444 attt 33237447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 40278724 - 40278823
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  40278724 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttggtttattt 40278823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 3021674 - 3021773
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |   ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  3021674 atagaccttctgcatgaagccggtagatcacattgtactataaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttggtttattt 3021773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 27655841 - 27655940
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||| ||||||||||||||||| || |||||||||  |  |||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||    
T  27655841 ataggtcttctgcatgaagctgatagatcacattgtactacaaagttatgtgatagatatcaattttcagctgctatggcattcttgtcttggtttattt 27655940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 43914215 - 43914116
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||||||||||| || |||||||||  |  |||||||||||| ||||||||| || |||||||||||| ||||||||| |||||||||||    
T  43914215 atagatcttctgcatgaagctgatagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatgacattcttgttttggtttattt 43914116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 22847413 - 22847314
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||| |||||||||| ||||||||||    
T  22847413 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcatggtttattt 22847314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 37090052 - 37090151
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||| | || |||||||||||| |||||||||||||||||||||    
T  37090052 atagaccttctgcatgaagccggtatatcacattgtactacaaagttatgtgatagatattaattttctgctgctatgacattcttgtcttggtttattt 37090151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 45149381 - 45149480
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| ||| |||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||    
T  45149381 atagaccttatgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgttatggcattcttgtcttggtttattt 45149480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 1587427 - 1587526
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| ||||||||||||||  ||| |||||||||  |  |||||||||||| || |||||| || | ||||||||||||||||||||||||||||||||    
T  1587427 atagaccttctgcatgaagccagtatatcacattgtactacaaagttatgtgatatatatcaattttttgctgctatggcattcttgtcttggtttattt 1587526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 45969855 - 45969756
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| ||||| |||||||| |||| |||||||||  |  | |||||||||| || |||||| || ||||||||||||||||||||||||||||||||||    
T  45969855 atagaccttctacatgaagccggtagatcacattgtactacgaagttatgtgatatatatcaattttctgctgctatggcattcttgtcttggtttattt 45969756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 36951501 - 36951560
Alignment:
Q  185 caaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||    
T  36951501 caaagttatgtgatagatatcaattttccgctgctatggcattcttgtcttggtttattt 36951560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 17754412 - 17754505
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||| |||| |||||||||  |  |||||| ||||| ||||||||| || ||| || |||| ||||||||||||||||||||||    
T  17754412 cttctgcatgaagccggtagatcacattgtactacaaagtgatgtgatagatatcaattttctacttctatcgcattcttgtcttggtttattt 17754505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 19055732 - 19055825
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||| |||| |||||||||  |  |||||| ||||| ||||||||| || ||| || |||| ||||||||||||||||||||||    
T  19055732 cttctgcatgaagccggtagatcacattgtactacaaagtgatgtgatagatatcaattttctacttctatcgcattcttgtcttggtttattt 19055825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 244
Target Start/End: Original strand, 29492522 - 29492695
Alignment:
Q  68 taattaatgatataatttctgtattccaggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctgg 167  Q
    |||||||||||||||||| | || | ||||  |||||||||||   |||||||||||||||||    ||    ||| ||||| |||| ||||||||| ||    
T  29492522 taattaatgatataatttttataatgcaggaaatgtcatatct---attagctgcagcatgttaaatagattatgtcatagaccttcggcatgaagccgg 29492618  T
Q  168 taaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    || ||||||||   |  |||| ||||||| ||||||||| || |||| ||||||| |||| ||||||||||||||||    
T  29492619 tagatcacattctactacaaaattatgtgatagatatcaattttctgttgctatgacattattgtcttggtttattt 29492695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 33778048 - 33777949
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||| | ||  |  ||||||||| || ||||||| | || |||| ||||||| |||||||||||||||||||||    
T  33778048 atagaccttctgcatgaagccggtagatcagaatgtactacaaagttatatgatagatattatttttctgatgctatgccattcttgtcttggtttattt 33777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 30728631 - 30728527
Alignment:
Q  140 gtgttatagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtt 239  Q
    |||| ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || ||||||||||||||||| |||||||||||    
T  30728631 gtgtcatagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattattgtcttggtt 30728532  T
Q  240 tattt 244  Q
    |||||    
T  30728531 tattt 30728527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 41542840 - 41542667
Alignment:
Q  68 taattaatgatataatttctgtattccaggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctgg 167  Q
    |||||||||||||||||| | || | ||||  |||||||||||   |||||||||||||||||    ||    ||| ||||| |||| |||||||||  |    
T  41542840 taattaatgatataatttttataatgcaggaaatgtcatatct---attagctgcagcatgttaaatagattatgtcatagaccttcagcatgaagccag 41542744  T
Q  168 taaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||  |  |||||||||||| ||||||||| || | |||||||||||||||||| |||||||||||||    
T  41542743 taaatcacattgtactacaaagttatgtgatagatatcaattttatgctgctatggcattcttatcttggtttattt 41542667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 41576312 - 41576408
Alignment:
Q  148 gatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||||||| |||| |||||||||  |   ||||||||||| ||||||||| || | ||||| ||||||||||||||||||||||||||    
T  41576312 gatcttctgcatgaagccggtatatcacattgtactaaaaagttatgtgatagatatcaattttttgctgatatggcattcttgtcttggtttattt 41576408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 12764681 - 12764780
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||  |||| |||||||||     |||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  12764681 atagaccttctgcatgaagtcggtatatcacattgtattacaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 12764780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 34055645 - 34055738
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||||  ||| || ||||||  |  |||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||    
T  34055645 cttctgcatgaagcctgtatattacattgtaccacaaagttatgtgatagatatcgattttctgctgctatggcattcttgtcttggtttattt 34055738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 41393168 - 41393227
Alignment:
Q  185 caaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||| ||||||||| || |||||| |||||||||||||||||||||||||||    
T  41393168 caaagttatgtgatagatatcaattttctgctactatggcattcttgtcttggtttattt 41393227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 39584140 - 39584068
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctg 217  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||    
T  39584140 atagaccttctgcatgaagccggtatatcacattgtactacaaagttatgtgatagatatcaattttctgctg 39584068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 33583480 - 33583334
Alignment:
Q  94 caggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctggtaaatcacattgcccggcaaagttat 193  Q
    |||||| |||||||||||| ||||||||||||||||||  | || ||||| | ||||||  ||| |   || | ||||||  ||||||| | ||| ||||    
T  33583480 caggttttgtcatatctcttattagctgcagcatgttcaactgccagtgtcacagatctgttgcgtagtgccgataaatcctattgcccagaaaatttat 33583381  T
Q  194 gtggtagatatcagttgtctgctgctatggcattcttgtcttggttt 240  Q
    || ||||||| ||  | ||||||||||||||  ||||| ||||||||    
T  33583380 gtagtagataccaaatatctgctgctatggccatcttggcttggttt 33583334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 40260163 - 40260262
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||    
T  40260163 atagaccttctgcatgaagccggtatatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttgatttattt 40260262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 28293967 - 28294066
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||| ||||||| |||||||||||||    
T  28293967 atagaccttctgcatgaagccggtatatcacattgtgctacaaagttatgtgatagatatcaattttctgctgctatgacattcttatcttggtttattt 28294066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 4236728 - 4236825
Alignment:
Q  147 agatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||| ||||||||  |||| |||||| || |  ||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  4236728 agatcttccgcatgaagtcggtagatcacactgtcgtgcaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 4236825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 35434984 - 35435073
Alignment:
Q  155 tgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||| ||||||||||||||  |  |||||||||||| ||||||||| || || |||||| || |||||||||||||||||||||    
T  35434984 tgcatgaagccggtaaatcacattgtactacaaagttatgtgatagatatcaattttccgctgctgtgacattcttgtcttggtttattt 35435073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 33210859 - 33210958
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| | || |||||||||  |  |||||||||||| ||||||||| || |||||||||||  ||||||||||||||| |||||    
T  33210859 atagaccttctgcatgaagccgatatatcacattgtactacaaagttatgtgatagatatcaattttctgctgctataacattcttgtcttggtgtattt 33210958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 41798791 - 41798739
Alignment:
Q  192 atgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  41798791 atgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 41798739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 21366841 - 21366919
Alignment:
Q  152 ttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgt 232  Q
    ||||||||||||| |||| |||||||||  |  ||||||||||||  | |||||| || | ||||||||||||||||||||    
T  21366841 ttctgcatgaagccggtagatcacattgtactacaaagttatgtg--atatatcaattttttgctgctatggcattcttgt 21366919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 36928016 - 36928115
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||| | || |||||||||||| |||||||||||||||||||||    
T  36928016 atagaccttctgcatgaagccggtatatcacattgtactacaaagttatgtgatagatattaattttctgctgctatgacattcttgtcttggtttattt 36928115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 40033866 - 40033767
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||||||||||| |  |  |||||||||||| ||||||||| || ||| ||||||||||||||||||||| ||||||||    
T  40033866 atagaccttctgcatgaagccggtaaatcacatggtactacaaagttatgtgatagatatcaattttctactgctatggcattcttgtctttgtttattt 40033767  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 42987550 - 42987451
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || | |||||||||| |||||||||||||||||||||    
T  42987550 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttatgctgctatgacattcttgtcttggtttattt 42987451  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 220311 - 220213
Alignment:
Q  147 agatcttctgcatgaagctggtaaatcacattgcccggcaaagtt-atgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||||||||| |||| ||||||| | || ||||| || ||||| ||||||||| || |||||||||||| |||||||||||||||||||||    
T  220311 agatcttctgcatgaagccggtagatcacatcgtcctgcaaactttatgtgatagatatcaattttctgctgctatgacattcttgtcttggtttattt 220213  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 54445135 - 54445228
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||| ||| |||| |||||||||  |  |||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||    
T  54445135 cttctgcatgcagccggtagatcacattgtactacaaagttatgtcatagatatcaattttctgctgctatggcattcttgtcttggtttattt 54445228  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 39633070 - 39632987
Alignment:
Q  158 atgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggttta 241  Q
    |||||||||||| |||||||||  |  |||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||    
T  39633070 atgaagctggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgttatggcattcttgtcttggttta 39632987  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 38392628 - 38392715
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggt 238  Q
    |||||| ||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||| |||||||||||||||    
T  38392628 cttctggatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatgacattcttgtcttggt 38392715  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 46614267 - 46614172
Alignment:
Q  149 atcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||||||   || ||||||||| ||  ||||||||| || ||||||||| || ||||||| | ||||||||||||||||||||||||    
T  46614267 atcttctgcatgaagccaatagatcacattgtcctacaaagttatatgatagatatcaattttctgctgttgtggcattcttgtcttggtttattt 46614172  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 1565444 - 1565352
Alignment:
Q  151 cttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||||  |||||||||||||  |  |||||||||||| ||||||||| || ||||||| ||||| |||||||||||| |||||||    
T  1565444 cttctgcatgaagccagtaaatcacattgtactacaaagttatgtgatagatatcaatt-tctgctgttatggtattcttgtcttgatttattt 1565352  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 40278876 - 40278931
Alignment:
Q  189 gttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||| |||| |||| || |||||||||||||||||||||||||| |||||||    
T  40278876 gttatgtgatagaaatcaattttctgctgctatggcattcttgtcttgatttattt 40278931  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 10574596 - 10574497
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| || |||||||||||| |||| ||||||||||||||||    
T  10574596 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaattttctgctgctatgacattattgtcttggtttattt 10574497  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 27481789 - 27481697
Alignment:
Q  152 ttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||| ||||  ||||||||  |  |||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||    
T  27481789 ttctgcatgaagccggtagttcacattgtactacaaagttatgtgatagatatcaattttctgctgctatggcattcttgtcttagtttattt 27481697  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 5438616 - 5438715
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| |||| |||||||||  |  |||||||||||| ||||||||| ||  ||||||||||| |||||||||||| ||||||||    
T  5438616 atagaccttctgcatgaagccggtagatcacattgtactacaaagttatgtgatagatatcaatttcctgctgctatgacattcttgtcttagtttattt 5438715  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 18060017 - 18059918
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| | || || ||||||  |  |||||||||||| ||||||| | || |||||| |||||||||||||||||||||||||||    
T  18060017 atagaccttctgcatgaagccgatagattacattgtactacaaagttatgtgatagatattaattttctgctactatggcattcttgtcttggtttattt 18059918  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 41726575 - 41726516
Alignment:
Q  185 caaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||    
T  41726575 caaagttatgtgatagatatccattttctgctgctatggcattcttgtcttggtttattt 41726516  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 43207445 - 43207544
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| | || |||||||||  |  |||||||||||| ||||||||| || | || ||||||| |||||||||||||||||||||    
T  43207445 atagaccttctgcatgaagccgatatatcacattgtactacaaagttatgtgatagatatcaattttttgttgctatgacattcttgtcttggtttattt 43207544  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 8590189 - 8590092
Alignment:
Q  147 agatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    |||||||||| ||||||| |||| |||| |||  || ||||||||||||| |||||||||  | ||| |||||||| |||||||||||||||||||||    
T  8590189 agatcttctggatgaagccggtagatcatattatcctgcaaagttatgtgatagatatcaactttctactgctatgacattcttgtcttggtttattt 8590092  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 26582803 - 26582630
Alignment:
Q  68 taattaatgatataatttctgtattccaggttatgtcatatctctcattagctgcagcatgttccgcagcaagtgttatagatcttctgcatgaagctgg 167  Q
    |||||||||||||||||| | || | ||||  |||||||||||   |||||||||||||||||    ||    ||| ||||| ||||| |||||||| ||    
T  26582803 taattaatgatataatttttataatgcaggaaatgtcatatct---attagctgcagcatgttaaatagattatgtcatagaccttctacatgaagccgg 26582707  T
Q  168 taaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    || |||||||||  |  |||||||||||| ||||||||| || |||| || |||| ||||||||||||||| |||||    
T  26582706 tatatcacattgtactacaaagttatgtgatagatatcaattttctgttgttatgacattcttgtcttggtgtattt 26582630  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 1799110 - 1799209
Alignment:
Q  145 atagatcttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||| |||||||||||||| | || ||||||| |  |  |||||||||||| ||||||||| || |||||| ||||| ||||||||||||||| |||||    
T  1799110 atagaccttctgcatgaagccgatatatcacatggtactacaaagttatgtgatagatatcaattttctgctactatgacattcttgtcttggtgtattt 1799209  T

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Target: scaffold0474 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 12730 - 12822
Alignment:
Q  152 ttctgcatgaagctggtaaatcacattgcccggcaaagttatgtggtagatatcagttgtctgctgctatggcattcttgtcttggtttattt 244  Q
    ||||||||||||  |||| |||||||||  |  |||||||||||| || |||||| ||  | ||||||||| ||||||||||||||| |||||    
T  12730 ttctgcatgaagtcggtatatcacattgtactacaaagttatgtgatacatatcaatttccggctgctatgacattcttgtcttggtctattt 12822  T

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