View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21662_high_5 (Length: 633)
Name: NF21662_high_5
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 20 - 625
Target Start/End: Original strand, 37374935 - 37375531
Alignment:
| Q |
20 |
ctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37374935 |
ctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagc |
37375034 |
T |
|
| Q |
120 |
aacggtattattttgattttctgctataactttatcatctat----ttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375035 |
aacggtattattttgattttctgctataactttatcatctatatatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagca |
37375134 |
T |
|
| Q |
216 |
actttaaaataagcaaattcagagagacaatctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375135 |
actttaaaataagcaaattcagagagacaatctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcg |
37375234 |
T |
|
| Q |
316 |
agtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375235 |
agtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagct |
37375334 |
T |
|
| Q |
416 |
tttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcatatcattgaca |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37375335 |
tttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcat---------- |
37375424 |
T |
|
| Q |
516 |
acaatcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcatcgtcatgtacaagaatatatagacagttc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37375425 |
---atcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcattatcatgtacaagaatatatagacagttc |
37375521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 625
Target Start/End: Original strand, 37382277 - 37382881
Alignment:
| Q |
20 |
ctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagc |
119 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37382277 |
ctaagaaagtacatagcttaggtttgaaatttggaattcatgttatgagagggattagcacacaagctgtgaatgcaaacacccctatcctagataca-- |
37382374 |
T |
|
| Q |
120 |
aacggtattattttgattttctgctataactttatcatctatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaactt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||||||||| |||||| ||| ||| ||||||||||||| | || |
|
|
| T |
37382375 |
-acggtattattttgattctctgctataactttatcttcaatttaattctgtattataaattcacatgtatgtaagtggataaactcaaataagcgaatt |
37382473 |
T |
|
| Q |
220 |
taaaataagcaaattcagagagaca----atctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtcg |
315 |
Q |
| |
|
||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
37382474 |
caaaataagccaattcaaagagacacgtaacctaaaacaaaagttcttattgaccttttcacgtgatttcctagggtgctgcttatcaagaatctggtcg |
37382573 |
T |
|
| Q |
316 |
agtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagct |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
37382574 |
agtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaatacaaagttaggagcaggaagagct |
37382673 |
T |
|
| Q |
416 |
tttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcatatcattgaca |
515 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37382674 |
tttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtcacaacatttttatcatatcattgaca |
37382773 |
T |
|
| Q |
516 |
acaatcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcatcgtcatgtacaagaatatatagacagttc |
615 |
Q |
| |
|
||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||| |||||| |
|
|
| T |
37382774 |
acaatcatgatgattttgaatttacaaactattgattgattatacattcatgtattaatttggaattgcattatcatgtacaaga--atatacacagttt |
37382871 |
T |
|
| Q |
616 |
tgcctatgct |
625 |
Q |
| |
|
|||||||||| |
|
|
| T |
37382872 |
tgcctatgct |
37382881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 548
Target Start/End: Original strand, 37360113 - 37360650
Alignment:
| Q |
20 |
ctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagc |
119 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37360113 |
ctaagaaagtacatagcttaggtttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaac |
37360212 |
T |
|
| Q |
120 |
aacggtattattttgattttctgctataactttatcatctatttat--ttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||| |||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
37360213 |
aacggtattattttgattttctgctataactttatcttctatatatatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaat |
37360312 |
T |
|
| Q |
218 |
tttaaaataagcaaattcagagagaca----atctaaaacaaaagtt---cttattgaccttttcttgtgatatactagggtgctgcttatcaagaactt |
310 |
Q |
| |
|
|| |||||||| |||||| ||||||| ||||| || |||||||||||||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
37360313 |
ttcaaaataaggcaattcaaagagacacataatctatttttttttttatccttattgaccttttcttgcgatatcacagggtgctgcttatcaagaatct |
37360412 |
T |
|
| Q |
311 |
ggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcaggga |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
37360413 |
ggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccggga |
37360512 |
T |
|
| Q |
411 |
gagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcatatcat |
510 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| | || |
|
|
| T |
37360513 |
aagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgttat |
37360612 |
T |
|
| Q |
511 |
tgacaacaatcatgatgattttaaatctacaaagtatt |
548 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37360613 |
tgacaacaatcatgatgatttgaaatctacaaagtatt |
37360650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 37367951 - 37367412
Alignment:
| Q |
20 |
ctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagc |
119 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37367951 |
ctaagaaagtacatagcttaggtttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaac |
37367852 |
T |
|
| Q |
120 |
aacggtattattttgattttctgctataactttatcatctatttat--ttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||| || ||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
37367851 |
aacggtattattttgattttctgctataactttatcttctatatatatttatgcattatacatacacaagtatatcagtagataaactcgaataagcaat |
37367752 |
T |
|
| Q |
218 |
tttaaaataagcaaattcagagagacaa----tctaaaacaaaagtt-----cttattgaccttttcttgtgatatactagggtgctgcttatcaagaac |
308 |
Q |
| |
|
|| |||||||| |||||| ||||||| ||||| || |||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
37367751 |
ttcaaaataaggcaattcaaagagacacatattctaattttttttttttatccttattgaccttttcttgcgatatcacagggtgctgcttatcaagaat |
37367652 |
T |
|
| Q |
309 |
ttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagg |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
37367651 |
caggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaacgttaggagccgg |
37367552 |
T |
|
| Q |
409 |
gagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcatatc |
508 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
37367551 |
gaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaacatttttatcatgtt |
37367452 |
T |
|
| Q |
509 |
attgacaacaatcatgatgattttaaatctacaaagtatt |
548 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37367451 |
attgacaacaatcatgatgatttgaaatctaaaaagtatt |
37367412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 356 - 468
Target Start/End: Complemental strand, 37386455 - 37386342
Alignment:
| Q |
356 |
tgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgctt-ggggt |
454 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
37386455 |
tgttcatggatgcaaaacggtttcatgagagtaaatgcaacgttaggtgcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggt |
37386356 |
T |
|
| Q |
455 |
gttgatcttggtac |
468 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37386355 |
gttgatcttggtac |
37386342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 20 - 468
Target Start/End: Complemental strand, 41230331 - 41229855
Alignment:
| Q |
20 |
ctaagaaagtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagc |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||| ||||||||| | |
|
|
| T |
41230331 |
ctaagaaagtacatagcttaggtttaaagtttggaattcatattatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatc |
41230232 |
T |
|
| Q |
120 |
aacggta-ttattttgattttctgctataactttatcatctatttatttatgtattataaattcacaag----------tatgtcagtagattaactcaa |
208 |
Q |
| |
|
|| |||| || |||| ||| || | |||||| ||| ||||||||||| |||||||| || | | || ||||||||||||| | |||| |
|
|
| T |
41230231 |
aaaggtatttggtttgcatttttgatttaacttgatcttctatttatttctgtattatgaacttatcagtgcttatgcttatgtcagtagataaggtcaa |
41230132 |
T |
|
| Q |
209 |
ataagcaactttaaaataagcaaattcagagagac----aatctaaaacaaaagttcttattga----------ccttttcttgtgatat---actaggg |
291 |
Q |
| |
|
|||||||| || |||||||| | |||| | | | |||||||||||||| ||| |||||| ||| |||||||||| | ||||||| |
|
|
| T |
41230131 |
ataagcaaattaaaaataagtcagttcatacatgcacttaatctaaaacaaaatttcatattgacttttgatgtcctcttcttgtgatcttttactaggg |
41230032 |
T |
|
| Q |
292 |
tgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaat |
391 |
Q |
| |
|
| ||||||||||||| |||||| || ||| ||||||||||||||||||||| | |||| |||| ||||||| |||||||||||||||||| || |
|
|
| T |
41230031 |
cggtgcttatcaagaatctggtcgtgtgtggcatgcaaaagacatagcaatcccaaaaagagcttgtggatggatgcagaatggtttcatgagtgtagat |
41229932 |
T |
|
| Q |
392 |
acaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtac |
468 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41229931 |
acaacattaggggcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
41229855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 576
Target Start/End: Complemental strand, 41229754 - 41229716
Alignment:
| Q |
538 |
tacaaagtattgattgattatacattcatgtattaattt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41229754 |
tacaaagtattgattgattatacattcatgtgttaattt |
41229716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 39243446 - 39243545
Alignment:
| Q |
27 |
agtgcatagcttaggtttaaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagcaacggta |
126 |
Q |
| |
|
|||||||| | | |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
39243446 |
agtgcataacatgggtttaaagtttgggattcatgttatgagagggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta |
39243545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 320 - 469
Target Start/End: Original strand, 39243773 - 39243922
Alignment:
| Q |
320 |
tggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttt |
419 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||| |||||| || |||||||||||||||||||||| | ||| || || || | ||| |||| |
|
|
| T |
39243773 |
tggtatgcaaaagacatagggatccctgaaagggcttgtggctggatgactcatggtttcatgagtgtaaatactacgttgggtgctggcaaagcctttt |
39243872 |
T |
|
| Q |
420 |
tgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtact |
469 |
Q |
| |
|
|||| || ||| ||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
39243873 |
tgaggtccctttatgtgcagtatgctgaatggggtgttgattttggtact |
39243922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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