View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_high_8 (Length: 537)
Name: NF21662_high_8
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 354 - 529
Target Start/End: Original strand, 5891547 - 5891722
Alignment:
| Q |
354 |
gaaggatgagaagttggaactaaatttagaaaagaaagagtcaatcaagggtgcatgtacagttagtggagcctacctttgtcacattaacaaaacaaaa |
453 |
Q |
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| T |
5891547 |
gaaggatgaaaagttggaactaaatttagaaaagaaagagtcaatcaaggttgcatgtacagttagtggagcctaccttggtcacattaacaaaacaaaa |
5891646 |
T |
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| Q |
454 |
atgcttgctcttacctcattccacatcttttgttgtaaaaaacactggctgcaatgtgaaaagtcaaacctatgat |
529 |
Q |
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| T |
5891647 |
atgtttgctcttacctcattccacatcttttgttgtaaaaaacactggcttttacatgaaaagtcaaacctatgat |
5891722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 5891208 - 5891345
Alignment:
| Q |
15 |
atcaaactctagctatgatttataaatactaatccaaactttgcaaaccagaaattttttggctataataattatgaattttttgcaacatggacatgca |
114 |
Q |
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| T |
5891208 |
atcaaactctagctatgatttataaatactaatccaaactttgcaaaccagaaattttttggctataataattatgaattttttgcaacatggacatgca |
5891307 |
T |
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| Q |
115 |
aagagtggacaagggaaggaattgaaaagacaaagaac |
152 |
Q |
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| T |
5891308 |
aagagtggacaagggaaggaattgaaaagacaaagaac |
5891345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 5891413 - 5891487
Alignment:
| Q |
220 |
tgaaataacaaaagtaggaagagaaaggaacataccctgattaagcaggaagaaaattgatgattgatagtaagc |
294 |
Q |
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| T |
5891413 |
tgaaataacaaaagtaggaaaagaaaggaacataccctgattaagcaggaacaaaattgatgattgatagtaagc |
5891487 |
T |
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