View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_10 (Length: 528)
Name: NF21662_low_10
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 52495252 - 52494737
Alignment:
| Q |
1 |
actttgtaacctcaaagggacataattcaaatcctaagacaattataaaatggtcattactcattagtgtcaccgttattaataataatatcctcttgta |
100 |
Q |
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| T |
52495252 |
actttgtaacctcaaagggacataattcaaatcctaagacaattataaaatggtcattactcattagtgtcaccgttattaataataatatcctcttgta |
52495153 |
T |
|
| Q |
101 |
catatattttttt-aaaagtagctgcatagtgnnnnnnnnnnnnnnnnnnnnnataagactagaagccttggaaactgtattttattttcatggctgtga |
199 |
Q |
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| T |
52495152 |
catatattttttttaaaagtagctgcatagtgttttttttttattttttta--ataagactagaatccttggaaactgtattttattttcatggctgtga |
52495055 |
T |
|
| Q |
200 |
atatagatttgttgtgtgattatatatttttgtatagttgaggtgaagagtggagaagatgggttcatagtcaaaatgagggatggtagacacttgcgat |
299 |
Q |
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| T |
52495054 |
atatagatttgttgtgtgattatttatttttgtatagttgaggtgaagagtggagcagatgggttcatagtcaaaatgagggatggtagacacttgcgat |
52494955 |
T |
|
| Q |
300 |
gcgtccataacagccctcatggaggaattcttccagattatccaccacatcctgcaattgtgttgaagatggaggatggaactggtttacttctccccat |
399 |
Q |
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| T |
52494954 |
gcgtccataacagccctcatggaggacttcttccagattatgcaccacatcctgcaattgtgttgaagatggaggatggaactggtttacttctccccat |
52494855 |
T |
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| Q |
400 |
aattgtttgtatgtcttttactccctttctatattgtatcgtaccatgaatttgtattgaattgcattgtatcatacaagtttactttttggatcttgta |
499 |
Q |
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| T |
52494854 |
aattgtttgtatgtcttttactccttttctatattgtattgtaccatgaatttgtattgaattgcattgtatcatacaagtttactttttggatcttgta |
52494755 |
T |
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| Q |
500 |
tattattttcgtgatgat |
517 |
Q |
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| T |
52494754 |
tattattttcgtgatgat |
52494737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 36648920 - 36648884
Alignment:
| Q |
61 |
tcattagtgtcaccgttattaataataatatcctctt |
97 |
Q |
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| T |
36648920 |
tcattagtgtcacctttattaataataatttcctctt |
36648884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 7217347 - 7217164
Alignment:
| Q |
234 |
tagttgaggtgaagagtggagaagatgggttcatagtcaaaatgagggatggtagacacttgcgatgcgtccataacagccctcatggaggaattcttcc |
333 |
Q |
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||||||||||||||||||||| |||||| |||||| |||||||||||||||| | ||||||| |||| |||||||||| ||||| ||||| |||||| |
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| T |
7217347 |
tagttgaggtgaagagtggagcagatggtttcataatcaaaatgagggatggaaaacacttgagatgtgtccataacaatcctcagggaggtcatcttcc |
7217248 |
T |
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| Q |
334 |
agattatccaccacatcctgcaattgtgttgaagatggaggatggaactggtttacttctccccataattgtttgtatgtcttt |
417 |
Q |
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|||||| ||||||||||||| || || ||||| ||||| ||||| ||| |||||||| || |||||||||||||||||||| |
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| T |
7217247 |
tgattattcaccacatcctgctatggttttgaaaatggaagatgggtctgacttacttctacctataattgtttgtatgtcttt |
7217164 |
T |
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