View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21662_low_11 (Length: 513)
Name: NF21662_low_11
Description: NF21662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21662_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 44495087 - 44494680
Alignment:
| Q |
1 |
ctaagagctttcatggtttagtttgattactaattacttgtaacccttttttgtgcttcaaatgaagagaaagggggaacacttaaattgtgtagatatt |
100 |
Q |
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| T |
44495087 |
ctaagagctttcatggtttagtttgtttactaattacttgtaacccttttttgtgcttcaaatgaagagaaaggaggaacacttaaattgtgtagatatt |
44494988 |
T |
|
| Q |
101 |
ccaagttttaattagttatagcattacaaaggccaggggtaatatttaactgcaccgttaaatgttaatacactattctcttttttatattttatactat |
200 |
Q |
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| T |
44494987 |
ccaagttttaattagttatagcattacaaaggccaggggtaatatttaactgcaccgttaaatgttaatacactattctcttttttatattttatactat |
44494888 |
T |
|
| Q |
201 |
aatttagttaatttttggcatatcatattaacttatgtgggttttatttcctagcaattaagtgaatccatttttaagttgtatgataaattttgctttt |
300 |
Q |
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| T |
44494887 |
aatttagttaatttttggcatatcatattaacttatgtgggttttatttcctagcaattaagtgaatccatttttaagttgtatgataaattttgctttt |
44494788 |
T |
|
| Q |
301 |
agcctcttaagaaaattataatattaaaatttaatcgagtattgtttgtttatgttttaacaacattatatcaaccgatgaaaagacagatattatacat |
400 |
Q |
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| T |
44494787 |
agcctcttaagaaaattataatattaaaatttaatcgagtattgtttgtttatgttttaacaacattatatcaaccgatgaaaagacagatattatacat |
44494688 |
T |
|
| Q |
401 |
gccatcac |
408 |
Q |
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| T |
44494687 |
gccatcac |
44494680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 44470438 - 44470338
Alignment:
| Q |
2 |
taagagctttcatggtttagttt---gattactaattacttgtaacccttttttgtgcttcaaatgaagagaaagggggaacacttaaattgtgtagata |
98 |
Q |
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|||||| |||||||||||||| | | ||| ||||||||||||||| ||||||||||| ||| ||||||||| | ||||||| |||||||| |||||| |
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| T |
44470438 |
taagagatttcatggtttagtctttcggttattaattacttgtaacc-ttttttgtgctccaagagaagagaaaagaggaacacctaaattgtttagata |
44470340 |
T |
|
| Q |
99 |
tt |
100 |
Q |
| |
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|| |
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| T |
44470339 |
tt |
44470338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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